DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaD and Pard3

DIOPT Version :9

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_006531583.1 Gene:Pard3 / 93742 MGIID:2135608 Length:1337 Species:Mus musculus


Alignment Length:552 Identity:111/552 - (20%)
Similarity:195/552 - (35%) Gaps:143/552 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 SDPRSNGYMQ--AKNKFNQEQTTNNNASGGQGMGQGQGQGQGMAGMNRQQSMQKRNTTFTASMRQ 189
            |||...|...  :.|.|:.|:.:..|.:          :....||..:|.:.....|    ..|:
Mouse   144 SDPALTGLSTSVSDNNFSSEEPSRKNPT----------RWSTTAGFLKQNTAGSPKT----CDRK 194

  Fly   190 KHSNY-------ADEDDEDTRDMTGRIRTEAGYE-IDRASAGNCKLNKQEKDRDKEQEDE----- 241
            |..||       :...::..|| ..|....|.:. :||      .|.|||:|.:..:||.     
Mouse   195 KDENYRSLPRDPSSWSNQFQRD-NARSSLSASHPMVDR------WLEKQEQDEEGTEEDSSRVEP 252

  Fly   242 FGYTMAKINKRYNMMKD--LRRIEVQRDASKPLGLALAGHKDR--QKMACFVAGVDPNGALGSVD 302
            .|:....:....|...|  ::.::|..|.. |||:.:.....|  :.:...|..::..|.....:
Mouse   253 VGHADTGLENMPNFSLDDMVKLVQVPNDGG-PLGIHVVPFSARGGRTLGLLVKRLEKGGKAEQEN 316

  Fly   303 I-KPGDEIVEVNGNVLKNRCHLNASAVFKN--------------VDGDKLVMITSRRKPN----- 347
            : ...|.||.:|...|:||....|..:|:.              .:.::...::.|.|.|     
Mouse   317 LFHENDCIVRINDGDLRNRRFEQAQHMFRQAMRARVIWFHVVPAANKEQYEQLSQREKNNYSPGR 381

  Fly   348 --DEGMCV----------KPIKKFPTASDETKFIFDQFP-------------------------- 374
              .:..||          :.:.:.|..|...:.: |..|                          
Mouse   382 FSPDSHCVANRSVANNAPQALPRAPRLSQPPEQL-DAHPRLPHSAHASTKPPAAPALAPPSVLST 445

  Fly   375 ------------KARTVQVRK--EGFLGIMVIYGKHAEVGSG--IFISD-LREGSNAELAGVKVG 422
                        |...:|::|  || ||.. |..:...:|..  |::.: |..|:..:...:|.|
Mouse   446 NVGSVYNTKKVGKRLNIQLKKGTEG-LGFS-ITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAG 508

  Fly   423 DMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSEEA-----IKAEKAAEEKKKEEAKKE 482
            |.|:.||.......:.::...||:..:...|:.||..:.|||     :.||.:..:..||...::
Mouse   509 DRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPREMNAEPSQMQTPKETKAED 573

  Fly   483 EEKPQEP------ATAEIKPNKKILIELKVEKKPMGVIVCG--GKNNHVTTGCVITHVYPEGQVA 539
            |:....|      .|.|:..|..       ....:||.|.|  .|.||...|..:..:...|..:
Mouse   574 EDVVLTPDGTREFLTFEVPLNDS-------GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAAS 631

  Fly   540 ADKRLKIFDHICDINGTPI----HVGSMTTLK 567
            .|.||::.|.:..:||..:    :..:|.||:
Mouse   632 KDGRLRVNDQLIAVNGESLLGKANQEAMETLR 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ_signaling 27..115 CDD:238492
PDZ_signaling 259..340 CDD:238492 17/97 (18%)
PDZ_signaling 377..457 CDD:238492 20/84 (24%)
PDZ_signaling 500..584 CDD:238492 18/74 (24%)
PDZ_signaling 597..672 CDD:238492
Pard3XP_006531583.1 DUF3534 2..83 CDD:338230
PDZ_signaling 272..347 CDD:238492 17/75 (23%)
PDZ_signaling 465..544 CDD:238492 20/80 (25%)
PDZ_signaling 588..681 CDD:238492 21/83 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.