DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaD and Pdzd2

DIOPT Version :10

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001074533.1 Gene:Pdzd2 / 68070 MGIID:1922394 Length:2796 Species:Mus musculus


Alignment Length:820 Identity:178/820 - (21%)
Similarity:284/820 - (34%) Gaps:223/820 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 HNPFPEL-IHMVTLDK------TGKKSFGICIVRGE------------VKDSPNTKTTGIFIKGI 65
            |:| ||: |..|.|.|      |...|||...|.|:            ....|......|::..:
Mouse    61 HSP-PEMEICTVYLTKQLGDTETVGLSFGNIPVFGDYGEKRRGGKKRKTHQGPVLDVGCIWVTEL 124

  Fly    66 VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDL-IKEADFKIELEIQTFDKSDEQQAKSDP 129
            ..:|||...|::::.|.||||||        |.::.: :..|.:..|   |.:            
Mouse   125 RKNSPAGKSGKVRLRDEILSLNG--------QLMVGVDVSGASYLAE---QCW------------ 166

  Fly   130 RSNG---YMQAKNKFNQEQTTNNNASGGQGMGQGQ------GQGQGMAG-MNRQQSMQKRNTTFT 184
              ||   |:....:|.|:.....|.:.|.....|:      |......| ..|:..:..|.....
Mouse   167 --NGGFIYLIMLRRFKQKAHLTYNGNSGNSSEPGETPTLELGDQTSKKGKRTRKFGVISRPAIIK 229

  Fly   185 ASMRQKHSNYADEDDEDTRDMTGRIRTEAG----YEIDRA-----SAGNCKLNKQEKDR------ 234
            |....|.::..|..|:.:.::.....:|.|    :|::..     ......|.:.|.||      
Mouse   230 APEDSKSNSGCDTADDPSSELENGTDSELGNGHAFELENGPNSLKDVAGPHLERSEADREAELRV 294

  Fly   235 --------DKEQEDEFGYTMAKINKRYNMMKDLRRIEVQR-------DASKPLGLALAGHK--DR 282
                    |...:..|..| .|.|  :.....|.|.||.|       ..|..||:.::|.:  .|
Mouse   295 PKTEAPLSDSNDKRRFSKT-GKTN--FQSSDSLAREEVGRIWKMELLKESDGLGIQVSGGRGSKR 356

  Fly   283 QKMACFVAGVDPNGAL---GSVDIKPGDEIVEVNGNVLKNRCHLNASAVFKNVDG---------- 334
            ...|..|..|...||.   |.:.:  |||::.:||::|....|..|.|:.::..|          
Mouse   357 SPHAIVVTQVKEGGAAHRDGRLSL--GDELLVINGHLLVGLSHEEAVAILRSATGMVQLVVASKE 419

  Fly   335 ---DKLVMITSRRKPNDEGMCVKPIKKFPTASDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKH 396
               :.|:.:||:..| |....|:.|..: |.:::.:...|......:..||     |.|:...:.
Mouse   420 SSAEDLLKLTSKSLP-DLTSSVEDISSW-TDNEDQEAARDDEEGTGSAAVR-----GTMLGSEES 477

  Fly   397 AEVGSGIFISDLREGSNAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTM-ILLTLK 460
            .:|||    |:..:|:|.|  ..|.|      |..:.|:|.   .:|.:.|.|.|... .|:...
Mouse   478 QDVGS----SEESKGNNLE--SPKQG------NSKMKLKSR---LSGGVHRLESVEEYNELMVRN 527

  Fly   461 SEEAIKAEKAAEEKKKEEAK---------------KEEEKPQEPATAE-----IKPNKKILIELK 505
            .:..|:..:.:.:.:|....               |:..:.......|     |:|:...:|.|.
Mouse   528 GDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISIIGLY 592

  Fly   506 VEK-KPMGVIVCGGKNNHVTTGCV-------ITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS 562
            .|| |.:|..:.||::      ||       :..::|.|..|.|.|||..|.|.|:||.||.  .
Mouse   593 KEKGKGLGFSIAGGRD------CVRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIK--G 649

  Fly   563 MTTLKVHQLFHTTYEKAVTLTV------------------FRADPPELEK--------------- 594
            :|..:....|.........|||                  .|:..|....               
Mouse   650 LTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPSFNSSGGAPAGGGQDEGGS 714

  Fly   595 ---------------FNVDLMKKAGKELG-----LSLSPNEIGCTIADLIQGQYPEIDSKLQRGD 639
                           ..|.|.|:....||     |:|..:..|..|..|..|...:::|.|.|||
Mouse   715 ASLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGD 779

  Fly   640 IITKFNGDALEGLPFQVCYA-LFKGANGKVSMEVTR-PKP 677
            .|.:.|...:........:| |.|...|.|.:.:.| |.|
Mouse   780 QILEVNSVNVRHAALSKVHAILSKCPPGPVRLVIGRHPNP 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ1_INAD-like 29..115 CDD:467276 25/104 (24%)
PDZ8_MUPP1-PDZ7_PATJ-PDZ2_INAD-like 259..342 CDD:467160 27/107 (25%)
PDZ3_INAD-like 379..454 CDD:467277 20/74 (27%)
PDZ4_INAD-like 501..585 CDD:467278 29/109 (27%)
PDZ5_INAD-like 596..674 CDD:467279 23/83 (28%)
Pdzd2NP_001074533.1 PDZ1_PDZD2-like 85..178 CDD:467274 25/117 (21%)
PDZ2_PDZD2-like 331..418 CDD:467239 22/88 (25%)
PDZ3_PDZD2-PDZ1_hPro-IL-16-like 587..672 CDD:467240 28/92 (30%)
PDZ4_PDZD2-PDZ2_hPro-IL-16-like 726..815 CDD:467241 23/88 (26%)
PHA03307 1050..>1355 CDD:223039
PHA03247 <1197..1562 CDD:223021
PDZ6_PDZD2-PDZ3_hPro-IL-16-like 2578..2663 CDD:467243
PDZ7_PDZD2-PDZ4_hPro-IL-16-like 2706..2791 CDD:467244
Blue background indicates that the domain is not in the aligned region.

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