DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaD and Pdzd2

DIOPT Version :10

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_038959013.1 Gene:Pdzd2 / 65034 RGDID:619958 Length:2818 Species:Rattus norvegicus


Alignment Length:836 Identity:175/836 - (20%)
Similarity:277/836 - (33%) Gaps:255/836 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 HNPFPEL-IHMVTLDK------TGKKSFGICIVRGE------------VKDSPNTKTTGIFIKGI 65
            |:| ||: |..|.|.|      |...|||...|.|:            ....|......|::..:
  Rat    61 HSP-PEMEICTVYLTKQLGDTETVGLSFGNIPVFGDYGEKRRGGKKRKTHQGPVLDVGCIWVTEL 124

  Fly    66 VPDSPAHLCGRLKVGDRILSLNGK-----DVRNSTEQAVIDLIKEADFKIELEIQTFDKSDEQQA 125
            ..:|||...|::::.|.||||||:     ||..::..|                           
  Rat   125 RKNSPAGKSGKVRLRDEILSLNGQLMVGVDVTGASYLA--------------------------- 162

  Fly   126 KSDPRSNG---YMQAKNKFNQEQTTNNNASGGQGMGQGQGQGQGMAGMNRQQSMQKRNTTFTASM 187
              :...||   |:....:|.|:.....|.:.|.....|:.....:.....::.  ||...|....
  Rat   163 --EQCWNGGFIYLIMLRRFKQKAHVTYNGNSGNSSEPGETPTLELGDQTSKKG--KRTRKFGVIS 223

  Fly   188 R---------QKHSNYADEDDEDTRDMTG-------------------RIRTEAGYEIDRASAGN 224
            |         .|.|:..|..|:...::..                   .::..||..::|:.|.:
  Rat   224 RPSISKTPEDSKSSSGCDTADDPNSELENGADPELGNGHAFELENGPHSLKDVAGPHLERSEADS 288

  Fly   225 ---CKLNKQE----KDRDKEQEDEFGYTMAKINKRYNMMKDLRRIEVQR-------DASKPLGLA 275
               .::.|.|    ...||.:..:.|.|      .:.....|.|.||.|       ..|..||:.
  Rat   289 EVELRVPKTEAPLSDSNDKRRFSKTGKT------DFQSSDCLAREEVGRIWKMELLKESDGLGIQ 347

  Fly   276 LAGHK--DRQKMACFVAGVDPNGAL---GSVDIKPGDEIVEVNGNVLKNRCHLNASAVFKNVDG- 334
            ::|.:  .|...|..|..|...||.   |.:.:  |||::.:||::|....|..|.|:.::..| 
  Rat   348 VSGGRGSKRSPHAIVVTQVKEGGAAHRDGRLSL--GDELLVINGHLLVGLSHEEAVAILRSATGM 410

  Fly   335 ------------DKLVMITSRRKPNDEGMCVKPIKKFPTASDETKFIFDQ---FPKARTVQVRKE 384
                        :.|:.:||:..| |....|:.:..:....|:.....|:   .|.|  |:|...
  Rat   411 VQLVVASKESSAEDLLKLTSKSLP-DLTSSVEDMSSWTDNEDQEAAGEDEEGSGPAA--VRVTMP 472

  Fly   385 GFLGIMVIYGKHAEVGSGIFISDLREGSNAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAE 449
            |       ..:..:|||.       |.|...|...|.|      |....|:|.   .:|.:.|.|
  Rat   473 G-------SEESQDVGSS-------EESKGNLESPKQG------NCKTKLKSR---LSGGVHRLE 514

  Fly   450 GVVTM-ILLTLKSEEAIKAEKAAEEKKKEEAK---------------KEEEKPQEPATAE----- 493
            .|... .|:....:..|:..:.:.:.:|....               |:..:.......|     
  Rat   515 SVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRL 579

  Fly   494 IKPNKKILIELKVEK-KPMGVIVCGGKNNHVTTGCV-------ITHVYPEGQVAADKRLKIFDHI 550
            |:|:...:|.|..|| |.:|..:.||::      |:       :..::|.|..|.|.|||..|.|
  Rat   580 IRPSVISIIGLYKEKGKGLGFSIAGGRD------CIRGQMGIFVKTIFPNGSAAEDGRLKEGDEI 638

  Fly   551 CDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTV------------------FRADPPELEKFN- 596
            .|:||.||.  .:|..:....|.........|||                  .|:..|   .|| 
  Rat   639 LDVNGIPIK--GLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSP---SFNT 698

  Fly   597 ---------------------------------VDLMKKAGKELG-----LSLSPNEIGCTIADL 623
                                             |.|.|:....||     |:|..:..|..|..|
  Rat   699 NSGGTPAGGGQEEGGSSSLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSL 763

  Fly   624 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA-LFKGANGKVSMEVTR-PKP 677
            ..|...:::|.|.|||.|.:.|...:........:| |.|...|.|.:.:.| |.|
  Rat   764 APGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHAILSKCPPGPVRLVIGRHPNP 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ1_INAD-like 29..115 CDD:467276 25/108 (23%)
PDZ8_MUPP1-PDZ7_PATJ-PDZ2_INAD-like 259..342 CDD:467160 27/107 (25%)
PDZ3_INAD-like 379..454 CDD:467277 18/74 (24%)
PDZ4_INAD-like 501..585 CDD:467278 28/109 (26%)
PDZ5_INAD-like 596..674 CDD:467279 24/117 (21%)
Pdzd2XP_038959013.1 PDZ1_PDZD2-like 85..178 CDD:467274 24/121 (20%)
PDZ2_PDZD2-like 331..418 CDD:467239 22/88 (25%)
PDZ3_PDZD2-PDZ1_hPro-IL-16-like 586..671 CDD:467240 27/92 (29%)
PDZ4_PDZD2-PDZ2_hPro-IL-16-like 726..815 CDD:467241 23/88 (26%)
PHA03247 <985..1446 CDD:223021
PDZ_canonical 1138..1204 CDD:483948
PDZ6_PDZD2-PDZ3_hPro-IL-16-like 2600..2685 CDD:467243
PDZ7_PDZD2-PDZ4_hPro-IL-16-like 2728..2813 CDD:467244
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.