DRSC/TRiP Functional Genomics Resources

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Protein Alignment inaD and Lnx1

DIOPT Version :10

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001101828.1 Gene:Lnx1 / 360926 RGDID:1308159 Length:728 Species:Rattus norvegicus


Alignment Length:492 Identity:112/492 - (22%)
Similarity:184/492 - (37%) Gaps:93/492 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 FPELIHM-----VTLDKTGK----KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 78
            ||.|.|:     :|..|..:    :|..|.:|.|.     .|....|.|:.|..|......|||.
  Rat   264 FPRLFHLIPDGEITSIKINRVDPNESLSIRLVGGS-----ETPLVHIIIQHIYRDGVIARDGRLL 323

  Fly    79 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI---QTFDKSDEQQAKSD--PRSNGYMQAK 138
            .||.||.:||.|:.|......:.|:::....:.|.:   |.|.......|...  ||.:.:....
  Rat   324 PGDIILKVNGMDISNVPHNYAVRLLRQPCQVLRLTVLREQKFRSRSNAPAPDSYGPRDDSFHVIL 388

  Fly   139 NKFNQEQTTN---------------NNASGGQGMGQGQ-GQGQGMAGMN----RQQSMQKRNTTF 183
            ||.:.|:...               |..:||.....|| .:...:..:|    |..|.:......
  Rat   389 NKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLI 453

  Fly   184 TASMRQKHSNYADEDDEDTRDMTGRIRTEAGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAK 248
            .||.|:.|...:.:..:.:.|    |..|||          |..|.|:.....|:... ....|.
  Rat   454 QASERRVHLVVSRQVRQPSPD----IFQEAG----------CISNGQQSPVSGERSTS-SKPAAT 503

  Fly   249 INKRYNMMKDLRRIEVQRDASKPLGLALAGHKDRQK--MACFVAGVDPNGALGSVD--IKPGDEI 309
            .:::.        :.||:|.::.||:.:.|....::  :..:|..|:|.|.: |.|  ||.||.:
  Rat   504 CHEKV--------VSVQKDPNESLGMTVGGGASHREWDLPIYVISVEPGGVI-SRDGRIKTGDIL 559

  Fly   310 VEVNGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTASDETKFIF---D 371
            :.|||..|.......|.|:.|:.....::.....::...:..|      .|.|.|....:.   |
  Rat   560 LNVNGIELTEVSRTEAVAILKSTPSSVVLKALEVKEQETQEDC------SPAALDSNHNVTPPGD 618

  Fly   372 QFP-------------KARTVQVRKE--GFLGIMVIYGKHAEVGS-GIFISDLREGSNAELAG-V 419
            ..|             ..:.|.:|:.  |.||..::.|.....|: ..||..:.||:.|...| :
  Rat   619 WSPSWVMWLELPQYLYNCKDVILRRNTAGSLGFCIVGGYEEYSGNQPFFIKSIVEGTPAYNDGRI 683

  Fly   420 KVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMIL 456
            :.||:|||||...|....:.....:||..:|.:|:.:
  Rat   684 RCGDILLAVNGRSTSGMMHACLARMLKELKGKITLTI 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ1_INAD-like 29..115 CDD:467276 24/97 (25%)
PDZ8_MUPP1-PDZ7_PATJ-PDZ2_INAD-like 259..342 CDD:467160 23/86 (27%)
PDZ3_INAD-like 379..454 CDD:467277 24/78 (31%)
PDZ4_INAD-like 501..585 CDD:467278
PDZ5_INAD-like 596..674 CDD:467279
Lnx1NP_001101828.1 mRING-HC-C3HC3D_LNX1 42..83 CDD:438435
PDZ1_LNX1_2-like 274..362 CDD:467165 24/92 (26%)
PDZ2_LNX1_2-like 384..466 CDD:467166 15/81 (19%)
PDZ3_LNX1_2-like 507..592 CDD:467167 23/93 (25%)
PDZ4_LNX1_2-like 637..725 CDD:467168 25/84 (30%)
Blue background indicates that the domain is not in the aligned region.

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