DRSC/TRiP Functional Genomics Resources

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Protein Alignment inaD and Lnx2

DIOPT Version :10

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001101799.1 Gene:Lnx2 / 360761 RGDID:1308222 Length:686 Species:Rattus norvegicus


Alignment Length:465 Identity:96/465 - (20%)
Similarity:163/465 - (35%) Gaps:146/465 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 PFPELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 86
            |..|:..::...:...:..||.:||       .|...|:||..::....|...|||...||:|::
  Rat   332 PRDEVFQVLLHKRDSAEQLGIKLVR-------RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAI 389

  Fly    87 NGKDVRNSTEQAVIDLIKEADFKIELEIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNNA 151
            ||.|::..|.:....:|:.:..::.|.|       .:..|..| |||..:|              
  Rat   390 NGHDLKQGTPELAAHIIQASGERVNLTI-------ARPGKPQP-SNGSREA-------------- 432

  Fly   152 SGGQGMGQGQGQGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTEAGYE 216
                          |....|..|.             ..||..:...|. ||.:|          
  Rat   433 --------------GAHSSNHAQP-------------PSHSRPSSHKDL-TRCVT---------- 459

  Fly   217 IDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRYNMMKDLRRIEVQRDASKPLGLALAGHKD 281
                    |    |||                            .|.|:::..:.||:.:||.:.
  Rat   460 --------C----QEK----------------------------HITVKKEPHESLGMTVAGGRG 484

  Fly   282 RQ--KMACFVAGVDPNGALG-SVDIKPGDEIVEVNGNVLKNRCHLNASAVFKNVDGDKLVMITSR 343
            .:  ::..||..|.|:|.|. ...||.||.::.:||..|.|..|..|.|:.|.......|::   
  Rat   485 SKSGELPIFVTSVPPHGCLARDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVIL--- 546

  Fly   344 RKPNDEGMCVKPIKKFPTASDETKFIFDQ----------------FPKA----RTVQVRKE--GF 386
                 :.:.|:..::...|::|....|.:                .|.|    ..:.:|:.  |.
  Rat   547 -----KALEVQIAEEAAQATEEQPGAFSENEYDASWSPSWVMWLGLPSALHSCHDIVLRRSYLGS 606

  Fly   387 LGIMVIYG---KHAEVGSGIFISDLREGSNAELAG-VKVGDMLLAVNQDVTLESNYDDATGLLKR 447
            .|..::.|   .|:  ....||..:..|:.|...| :|.|||::|||...|:..::.....:||.
  Rat   607 WGFSIVGGYEENHS--NQPFFIKTIVLGTPAYYDGRLKCGDMIVAVNGLSTVGMSHSALVPMLKE 669

  Fly   448 AEGVVTMILL 457
            ....||:.::
  Rat   670 QRNKVTLTVV 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ1_INAD-like 29..115 CDD:467276 21/85 (25%)
PDZ8_MUPP1-PDZ7_PATJ-PDZ2_INAD-like 259..342 CDD:467160 25/85 (29%)
PDZ3_INAD-like 379..454 CDD:467277 21/80 (26%)
PDZ4_INAD-like 501..585 CDD:467278
PDZ5_INAD-like 596..674 CDD:467279
Lnx2NP_001101799.1 mRING-HC-C3HC3D_LNX2 46..90 CDD:319694
PDZ1_LNX1_2-like 228..316 CDD:467165
PDZ2_LNX1_2-like 337..419 CDD:467166 22/95 (23%)
PDZ3_LNX1_2-like 463..550 CDD:467167 26/122 (21%)
PDZ4_LNX1_2-like 595..683 CDD:467168 22/87 (25%)
Blue background indicates that the domain is not in the aligned region.

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