DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaD and PsGEF

DIOPT Version :9

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_996333.4 Gene:PsGEF / 31224 FlyBaseID:FBgn0264598 Length:2777 Species:Drosophila melanogaster


Alignment Length:521 Identity:92/521 - (17%)
Similarity:148/521 - (28%) Gaps:211/521 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 DSPAHLCGRLKV---------------------GDRILSLN----GKD--VRNSTEQAVIDLIK- 104
            ||||.:...:.|                     .|.::|::    ||:  :.....|..:.|.| 
  Fly   488 DSPAEMAAAVTVTPQKPVATGSGSGSNSAAMALNDEVISISIDSMGKEDPLLPQQPQQPMKLSKK 552

  Fly   105 -----EADFKIELEIQTFDKSDEQQAKS---DPRSNGYMQAKNKFNQEQTT--NNNASGG--QGM 157
                 :||..:.|.....|...:..|.|   ..::.|...:.:|.|:....  ||..|||  |..
  Fly   553 ALHQRDADENLFLRFLELDPPADGNANSTTTQAQATGSQSSASKANESNANHLNNGTSGGRRQST 617

  Fly   158 GQGQGQGQGMAGMNRQQSMQKRNTTFTASMRQKHSN----------------------------- 193
            ....| |..:.|..||   |:..|.||.:.|...:.                             
  Fly   618 MPNSG-GSSVGGAVRQ---QQGRTPFTMTKRLTRTEERGFGFSIVWTHPPRVEKIEAGLSADRCG 678

  Fly   194 --------YADEDDEDT---RDMTGRIRTEAG---YEIDRAS-AGNCKLNKQEKDRDKEQEDEFG 243
                    :.|:.:..|   .|:...||::..   .||.|.| ||...:.          ..:.|
  Fly   679 ILPGDYVIFVDKHNVVTMPEADVLNLIRSQGSSLTLEIFRRSGAGATTIT----------STDLG 733

  Fly   244 YTMAKINKRYNMMKDLRRIE---------------VQRDASKPLGLALAGHKDRQKMACFVAGVD 293
            .....|:.|......|...|               :||..|..: ..||....|...||      
  Fly   734 QNNVHISTRLGAAVGLGSEEHTLATTATGTTTVMSLQRTTSTRI-QPLANSMSRPATAC------ 791

  Fly   294 PNGALGSVDIKPGDEIVEVNGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKK 358
             :|...|::             ..|.|.||......|    :.:|.:|..|:             
  Fly   792 -SGTTSSIE-------------AAKRRLHLPQVTFSK----ESIVPVTDNRR------------- 825

  Fly   359 FPTASDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVGSGIFISDLREGSNAELAGVKVGD 423
                    :|:.....       |::.|...:       ..|...|:..|.|..:          
  Fly   826 --------RFLLQLIS-------REQNFTAAL-------HFGVDRFVQPLGERKD---------- 858

  Fly   424 MLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSEEAIKAEKAAEEKKKEEAKKEEEKPQE 488
             |::.|...||..|.|:   ||:.||.::                        |:....:::.||
  Fly   859 -LISPNDHRTLFQNIDE---LLRIAEDIL------------------------EQLCSSDQQDQE 895

  Fly   489 P 489
            |
  Fly   896 P 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ_signaling 27..115 CDD:238492 15/79 (19%)
PDZ_signaling 259..340 CDD:238492 18/95 (19%)
PDZ_signaling 377..457 CDD:238492 16/79 (20%)
PDZ_signaling 500..584 CDD:238492
PDZ_signaling 597..672 CDD:238492
PsGEFNP_996333.4 DUF4799 <102..209 CDD:292674
C2 286..>381 CDD:278593
PDZ_signaling 644..716 CDD:238492 6/71 (8%)
RhoGEF 831..1000 CDD:295373 20/118 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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