DRSC/TRiP Functional Genomics Resources

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Protein Alignment inaD and Lnx1

DIOPT Version :9

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001153049.1 Gene:Lnx1 / 16924 MGIID:1278335 Length:728 Species:Mus musculus


Alignment Length:498 Identity:112/498 - (22%)
Similarity:184/498 - (36%) Gaps:105/498 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 FPELIHM-----VTLDKTGK----KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 78
            ||.|.|:     :|..|..:    :|..|.:|.|.     .|....|.|:.|..|......|||.
Mouse   264 FPRLFHLIPDGEITSIKINRADPSESLSIRLVGGS-----ETPLVHIIIQHIYRDGVIARDGRLL 323

  Fly    79 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFDKSDEQQAKS----------DPRSNG 133
            .||.||.:||.|:.|......:.|:::....:.|.:..     ||:.:|          .||.:.
Mouse   324 PGDIILKVNGMDISNVPHNYAVRLLRQPCQVLRLTVLR-----EQKFRSRSNAHVPDSYGPRDDS 383

  Fly   134 YMQAKNKFNQEQTTN---------------NNASGGQGMGQGQ-GQGQGMAGMN----RQQSMQK 178
            :....||.:.|:...               |..:||.....|| .:...:..:|    |..|.:.
Mouse   384 FHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPES 448

  Fly   179 RNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTEAGY-EIDRASAGNCKLNKQEKDRDKEQEDEF 242
            ......||.|:.|...:.:..:.:.|    |..|||: ...:.|.|..:.|...|......|   
Mouse   449 AAHLIQASERRVHLVVSRQVRQSSPD----IFQEAGWISNGQQSPGPGERNTASKPAATCHE--- 506

  Fly   243 GYTMAKINKRYNMMKDLRRIEVQRDASKPLGLALAGHKDRQK--MACFVAGVDPNGALGSVD--I 303
                             :.:.|.:|.|:.||:.:.|....::  :..:|..|:|.|.: |.|  |
Mouse   507 -----------------KVVSVWKDPSESLGMTVGGGASHREWDLPIYVISVEPGGVI-SRDGRI 553

  Fly   304 KPGDEIVEVNGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTASDETKF 368
            |.||.::.|||..|.......|.|:.|:.....::.....::...:..|      .|.|.|....
Mouse   554 KTGDILLNVNGIELTEVSRTEAVAILKSAPSSVVLKALEVKEQEAQEDC------SPAALDSNHN 612

  Fly   369 IF---DQFP-------------KARTVQVRKE--GFLGIMVIYGKHAEVGS-GIFISDLREGSNA 414
            :.   |..|             ..:.|.:|:.  |.||..::.|.....|: ..||..:.||:.|
Mouse   613 VTPPGDWSPSWVMWLELPQYLCNCKDVILRRNTAGSLGFCIVGGYEEYSGNKPFFIKSIVEGTPA 677

  Fly   415 ELAG-VKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMIL 456
            ...| ::.||:|||||...|....:.....:||..:|.:|:.:
Mouse   678 YNDGRIRCGDILLAVNGRSTSGMIHACLARMLKELKGRITLTI 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ_signaling 27..115 CDD:238492 25/96 (26%)
PDZ_signaling 259..340 CDD:238492 23/84 (27%)
PDZ_signaling 377..457 CDD:238492 25/84 (30%)
PDZ_signaling 500..584 CDD:238492
PDZ_signaling 597..672 CDD:238492
Lnx1NP_001153049.1 mRING-HC-C3HC3D_LNX1 42..83 CDD:319693
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 185..220
NPXY motif 185..188
Interaction with MAGEB18. /evidence=ECO:0000250 186..244
PDZ_signaling 276..360 CDD:238492 24/88 (27%)
PDZ_signaling 384..464 CDD:238492 15/79 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..500 3/18 (17%)
PDZ_signaling 506..589 CDD:238492 24/103 (23%)
PDZ_signaling 637..721 CDD:238492 25/84 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 53 1.000 Inparanoid score I5446
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19964
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.920

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