DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaD and grip2

DIOPT Version :9

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_031757025.1 Gene:grip2 / 100495373 XenbaseID:XB-GENE-854056 Length:1115 Species:Xenopus tropicalis


Alignment Length:758 Identity:142/758 - (18%)
Similarity:259/758 - (34%) Gaps:253/758 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 88
            |:.|. :||.|.| .|||. ::||...:..: |:..:.:..:.|..||...|.|||.||:|.::|
 Frog   185 PKTIE-ITLCKEG-NSFGF-VMRGGAHEDWH-KSRPLVVTYVRPGGPADREGTLKVSDRLLCVDG 245

  Fly    89 KDVRNSTEQAVIDLIK----EADFKIELEIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNN 149
            ..:.|.|....:.:::    ||.|:||.::...|                            |..
 Frog   246 ISLHNITHTDALSILRQCSQEAVFQIEYDVALMD----------------------------TVT 282

  Fly   150 NASG----------GQGMGQGQGQGQ-------------------------------GMAGMNRQ 173
            ||||          |..:|.....|.                               .:.|.:.:
 Frog   283 NASGPLLVEIAKTPGSTLGISLSTGTHRNKQVIVIDKVKPASVVDRCGALHPGDHILSIDGTSTE 347

  Fly   174 QSMQKRNTTFTASMRQK---------HSNYADEDDEDTRDMTGRIRTEAGYEIDRAS-------- 221
            .......|...||:.:.         ||..:             :|.....::.::.        
 Frog   348 HCTLMEATQLLASIIENVKLEILPAHHSRLS-------------LRPPETVKVQKSDHHHCWDPC 399

  Fly   222 --------AGNCK------LNKQEKDR------------------DKEQEDEFGYTMAKINKRYN 254
                    .|:||      .:.||..:                  ..:..:....|...::.|..
 Frog   400 VNYCHTPHPGHCKTPTWNSTSNQEYCKSLVAANFSSSSVAGTPGFSSQNSNTLPRTAHPMSPRTT 464

  Fly   255 MMKDLRRIEVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGSVD----IKPGDEI----VE 311
            |.   ||.:.::|           ||....:|....|  |.|.:...:    |..||.:    ::
 Frog   465 MS---RRRQKRKD-----------HKSSLSLASSTVG--PGGQIIHTESTEIILRGDPLNGFGIQ 513

  Fly   312 VNGNVLKNRCHLNASAVFKNVD-------------GDKLVMITSRRKPNDEGMCVKPIKKFPTAS 363
            :.|.:..... |::..:.:.::             ||:|:.|....  .::|...:..:....|:
 Frog   514 LQGGIFATET-LSSPPLIRFIEPDSPAERCGLLQVGDRLLSINGIL--TEDGTLEEANQLLRDAA 575

  Fly   364 DETKFIFD-QF-------PKARTVQV----RKEGFLGIMVIYGKHAEVGSGIFISDLREGSNAEL 416
            ...|...: :|       |.:.|..|    ||...||| .|.....:.|..:.|||:::||.|..
 Frog   576 LSNKVALEIEFDVAESVVPSSGTFHVKLPKRKGVELGI-TISSASRKPGEPLIISDIKKGSVAHR 639

  Fly   417 AG-VKVGDMLLAVNQDVTLES-NYDDATGLLKRAEGVVTMILLTLKSEEAIKAEKAAEEKKKEEA 479
            .| ::.||.|||:: ::.|:: :.:||..:|::.|.:|.:.:                  :|:|.
 Frog   640 TGTLEPGDKLLAID-NIRLDNCSMEDAVQILRQCEDLVKLKI------------------RKDED 685

  Fly   480 KKEEEKPQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRL 544
            ..:|   ||.:.|.|     ..:|||....|:|:.:.|  ........||:.:...|.......:
 Frog   686 NSDE---QETSGAII-----YTVELKRYGGPLGITISG--TEEPFDPIVISGLTKRGLAERTGAI 740

  Fly   545 KIFDHICDIN-----GTP----IHV----GSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFN 596
            .|.|.|..||     |.|    ||:    |...|||:.:.....:.:.::.::.....||.:   
 Frog   741 HIGDRILAINNVSLKGKPLSEAIHLLQMAGETVTLKIKKQAERIFPQRLSDSMNEGSDPEDD--- 802

  Fly   597 VDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGD 639
                          |:.::....::|:.....|.:||.|:..|
 Frog   803 --------------LTDSQKTSKLSDIYSTAVPSVDSALESWD 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ_signaling 27..115 CDD:238492 29/91 (32%)
PDZ_signaling 259..340 CDD:238492 17/101 (17%)
PDZ_signaling 377..457 CDD:238492 27/85 (32%)
PDZ_signaling 500..584 CDD:238492 22/96 (23%)
PDZ_signaling 597..672 CDD:238492 7/43 (16%)
grip2XP_031757025.1 PDZ_signaling 87..169 CDD:238492
PDZ_signaling 187..272 CDD:238492 27/88 (31%)
PDZ_signaling 287..370 CDD:238492 7/82 (9%)
PDZ_signaling 499..585 CDD:238492 12/88 (14%)
PDZ_signaling 598..681 CDD:238492 27/102 (26%)
PDZ_signaling 697..778 CDD:238492 23/87 (26%)
PDZ_signaling 1007..1084 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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