DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaD and whrn

DIOPT Version :9

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_012824768.2 Gene:whrn / 100486736 XenbaseID:XB-GENE-989669 Length:996 Species:Xenopus tropicalis


Alignment Length:476 Identity:96/476 - (20%)
Similarity:180/476 - (37%) Gaps:123/476 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 DLRRIEVQRDASKP-LGLALAGHKDRQKMACFVAGVDPNGALGSVDIKPGDEIVEVNGNVLKNRC 321
            ::|::.::|:.::. ||.::.|..: .....:|:.|:|........::.||:|::.||..|....
 Frog   230 EVRQVTLKRNRNQEGLGFSIRGGVE-HGTGIYVSLVEPGSLAEQEGLRVGDQILKANGRPLDRVT 293

  Fly   322 HLNASAVFKNVDGDKLVM--ITSRRKP------------NDEGMCVKPIKKFP------TASDET 366
            |..|....:.  ..|||:  ::|.|.|            :..|..|.|.:..|      .|..|.
 Frog   294 HAEAVKALRG--SQKLVLSVLSSGRIPGGHISSHIYTWVDAHGRSVSPPRGPPHLQSPLLAGTEQ 356

  Fly   367 KFIFDQFPKARTVQVRKEG-------------FLGIMVIYGKHAEVGSGIFISDLREGSNAELAG 418
            :       |...:|:.:||             .||:::..|  ||...||:|:.:.:||.||.||
 Frog   357 E-------KRSHLQLLQEGDEKKVNLVLGEGSSLGLLIRGG--AEYSLGIYITGVDKGSEAESAG 412

  Fly   419 VKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSEEAI-KAEKAAEEKK---KEEA 479
            :||||.:|.:|....|...:|:|..:|    |....:::|::....| .|....:|.:   ....
 Frog   413 LKVGDQILDINGSSFLSIPHDEAVRIL----GSSRHLMMTVRDVGRIPHARTIVDETQWLTSSYT 473

  Fly   480 KKEEEKPQEPATAE------IKP------------------NKKILIELKV-------EKKPMGV 513
            ...|.:|.....::      :||                  ...:|:|.|.       |:..|..
 Frog   474 GNGEPQPSLGTLSDTSSDSLVKPVFCRGPTGSQVTLSSLGNQTLVLLEEKARLLLTEPERSTMSY 538

  Fly   514 IVCGGKNNHVTTGCVITHVY----PEGQVAA-------------DKRLKIFDHIC---------- 551
            .:...|::|::...:|..::    .:.:|.|             .:.|.:||::.          
 Frog   539 YLQQYKDHHISVQALIMAMFELLNTQAKVTATFSLLSELRSQILPQDLAVFDNLVLKREIESMKS 603

  Fly   552 -DINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNE 615
             ..:|..:.|.|.|........|.|...|.|..       |...:.:|:|:......|.|.|.:.
 Frog   604 RQRSGDTVSVLSQTLSTSSSESHQTVSTASTAR-------ERLLWLLDVMENGTDPEGSSDSRSL 661

  Fly   616 IGCTIADLIQGQYPEIDSKLQ 636
            ...|:.|:   ...:::|.|:
 Frog   662 TQTTLPDI---SLDDVNSLLE 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ_signaling 27..115 CDD:238492
PDZ_signaling 259..340 CDD:238492 19/83 (23%)
PDZ_signaling 377..457 CDD:238492 28/92 (30%)
PDZ_signaling 500..584 CDD:238492 21/118 (18%)
PDZ_signaling 597..672 CDD:238492 9/40 (23%)
whrnXP_012824768.2 harmonin_N_like 40..117 CDD:416392
PLN02983 <144..>217 CDD:215533
PDZ_signaling 231..312 CDD:238492 19/83 (23%)
PDZ_signaling 370..450 CDD:238492 26/85 (31%)
HN_L-whirlin_R2_like 513..597 CDD:259823 13/83 (16%)
PDZ_signaling 905..976 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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