DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment inaD and gopc

DIOPT Version :9

Sequence 1:	NP_001246470.1	Gene:	inaD / 37629	FlyBaseID:	FBgn0001263	Length:	686	Species:	Drosophila melanogaster
Sequence 2:	XP_012818169.1	Gene:	gopc / 100145196	XenbaseID:	XB-GENE-5857191	Length:	450	Species:	Xenopus tropicalis

Alignment Length:	112	Identity:	34/112 - (30%)
Similarity:	50/112 - (44%)	Gaps:	10/112 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    27 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDV 91
            |..|.|.|...:..||.|..|:....|      |.|..|.|..||..||.|.|||.||::||.::
Frog   276 IRKVILAKEDHEGLGISITGGKEHGVP------ILISEIHPAQPADRCGGLHVGDAILAVNGINL 334

  Fly    92 RNSTEQAVIDLIKEADFKIELEI----QTFDKSDEQQAKSDPRSNGY 134
            |::..:..:.::.:...:||.|:    ...|..||.....|...:.|
Frog   335 RDAKHKEAVTILSQQRGEIEFEVVYVAPEIDSDDENVEYEDESGHRY 381

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
inaD	NP_001246470.1	PDZ_signaling	27..115	CDD:238492	29/91 (32%)
		PDZ_signaling	259..340	CDD:238492
		PDZ_signaling	377..457	CDD:238492
		PDZ_signaling	500..584	CDD:238492
		PDZ_signaling	597..672	CDD:238492
gopc	XP_012818169.1	SMC_prok_A	<9..>238	CDD:274009
		PDZ_signaling	276..358	CDD:238492	29/87 (33%)
		2a30	<332..417	CDD:273347	9/50 (18%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910