DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaD and patj

DIOPT Version :9

Sequence 1:NP_001246470.1 Gene:inaD / 37629 FlyBaseID:FBgn0001263 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_002931635.3 Gene:patj / 100036704 XenbaseID:XB-GENE-998168 Length:1829 Species:Xenopus tropicalis


Alignment Length:681 Identity:174/681 - (25%)
Similarity:281/681 - (41%) Gaps:154/681 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PELIH-----MVTLDKTGKKSFGICIVRGE-----VKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 78
            |...|     :|.:.|..:.|.||.||.|:     :|:....|  |||||.::.:|||.....||
 Frog  1006 PNFSHWGPPRIVEIWKEPQVSLGISIVGGQSIIKRLKNGEELK--GIFIKQVLENSPAGKTNALK 1068

  Fly    79 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQ 143
            .||:||.::|.|::|:|.:..::.||.:...:...||:...:.......:.:::.|.:|......
 Frog  1069 TGDKILEVSGVDLKNATHEEAVNAIKNSGNPVVFIIQSLSPTPRLMTAGNTKTSKYDKASTDSTV 1133

  Fly   144 EQTTNNNASGGQGMGQGQGQGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGR 208
            :..:....|||                              ....:....|.:..|....:|   
 Frog  1134 KTVSPVPFSGG------------------------------PPPMKLPPPYKESSDSHPLEM--- 1165

  Fly   209 IRTEAGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRY-NMMKDLRRIEVQRDASKPL 272
                                |.|:|.|.           ||.:|| :::.||..||:::| ...|
 Frog  1166 --------------------KAEEDSDD-----------KIRQRYADLLGDLHIIELEKD-KNGL 1198

  Fly   273 GLALAGHKDRQKMACFVAGVDPNGALGSVD-IKPGDEIVEVNGNVLKNRCHLNASAVFKNVDGD- 335
            ||:|||:|||.:|:.||..::|:|..|... |..|||::|:|..::..:.|.||||:.|..... 
 Frog  1199 GLSLAGNKDRSRMSIFVVAINPDGPAGQDGRIHVGDELLEINNQIIYGKSHQNASAIIKGAPSTL 1263

  Fly   336 KLVMITSRRKPNDEGMCVKPIKKFPTASDETKFIFDQFPKARTVQVRKEGFLGIMVIYGK----- 395
            |||.|  |.|...:.|.|.|               |..|::........|    :.:.||     
 Frog  1264 KLVFI--RNKDAVQQMAVNP---------------DPLPESSLTDEEHCG----LAVSGKGEETS 1307

  Fly   396 HAEVGSGIFISDLREGSNAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLK 460
            ..|:.:.:..|:.:...:.:....|....:...:|||:|.|                        
 Frog  1308 FKEIMASVTESEAKPAIDNQQKHSKSDTKISPDSQDVSLTS------------------------ 1348

  Fly   461 SEEAIKAEKAAEEKKKEEAKKEEEKPQ-EPATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVT 524
                :.:...||.............|. :|||..|.|.:::.||:...:..:|:.:.|| |:...
 Frog  1349 ----VPSYLPAESDISNYRNMPSPLPSFDPATCPIIPGQEMTIEISKGRSGLGLSIVGG-NDTPL 1408

  Fly   525 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPI----HVGSMTTLKVHQLFHTTYEKAVTLTVF 585
            ...||..||.||..|.|.||...|.|.::||..:    |..::|.|:      .|.:| |.|||:
 Frog  1409 EAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNASHEDAITALR------QTPQK-VQLTVY 1466

  Fly   586 R-----ADPPELEKFNVDLMKKAGKELGLSLSPNEI--GCTIADLIQGQYPEIDSKLQRGDIITK 643
            |     .|...|:.|:|:|.||||:.||||:.....  |..|:|:::|...:||.:|.:||.|..
 Frog  1467 RDEAQYKDEENLDIFHVELQKKAGRGLGLSIVGKRTGSGVFISDIVKGGAADIDGRLMQGDQIMS 1531

  Fly   644 FNGDALEGLPFQVCYALFKGANGKVSMEVTR 674
            .|||.:.....::...:.|.|.|.|.:|:.|
 Frog  1532 VNGDDMRNASQEIVATVLKCAQGLVHLEIGR 1562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaDNP_001246470.1 PDZ_signaling 27..115 CDD:238492 31/97 (32%)
PDZ_signaling 259..340 CDD:238492 34/82 (41%)
PDZ_signaling 377..457 CDD:238492 11/84 (13%)
PDZ_signaling 500..584 CDD:238492 27/87 (31%)
PDZ_signaling 597..672 CDD:238492 27/76 (36%)
patjXP_002931635.3 L27_2 13..70 CDD:312549
PDZ_signaling 142..225 CDD:238492
PDZ_signaling 256..328 CDD:238492
PDZ_signaling 364..449 CDD:238492
PDZ_signaling 556..620 CDD:238492
PDZ_signaling 692..770 CDD:238492
PDZ_signaling 1014..1105 CDD:238492 30/92 (33%)
PDZ 1186..1271 CDD:214570 36/87 (41%)
PDZ 1383..1468 CDD:214570 29/92 (32%)
PDZ_signaling 1480..1560 CDD:238492 28/79 (35%)
PDZ_signaling 1624..1709 CDD:238492
PDZ_signaling 1744..1828 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 67 1.000 Domainoid score I9660
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 181 1.000 Inparanoid score I3866
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1419918at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.060

Return to query results.
Submit another query.