DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL23 and AT5G46160

DIOPT Version :10

Sequence 1:NP_523813.1 Gene:RpL23 / 37628 FlyBaseID:FBgn0010078 Length:140 Species:Drosophila melanogaster
Sequence 2:NP_851140.1 Gene:AT5G46160 / 834658 AraportID:AT5G46160 Length:173 Species:Arabidopsis thaliana


Alignment Length:265 Identity:64/265 - (24%)
Similarity:84/265 - (31%) Gaps:77/265 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   542 NSGKKKAGPNQGQSRGNSSISSDSGSISPSGSNSSVGSSSAGTNQSASLNNVTGSSSSSSS---S 603
            ||....|.|.:...|..||:...|...:|..|.::. ||||..::...|.....|.|..|.   .
plant   244 NSMAGAASPTRSFPRSLSSLEGRSVPATPVLSRNAC-SSSALRSEGPGLCQRQWSGSQDSQVGYP 307

  Fly   604 SSSSSSSISNSSSANSLIASISNGGPVRPGQPSAQLTAT------PNARKPK------PTKKLP- 655
            |...|...:.|..:||..|.|....|..|.:||.:.:.|      |.|..|:      |..:.| 
plant   308 SERPSGHTARSRRSNSSEALIERPPPEAPAKPSYKSSETLSERPQPGAVPPQQWGARSPDPRTPS 372

  Fly   656 -----GG------------------PRNGTQP-------PSG-GNTGTTGGGPSRKPKKPNQQSQ 689
                 ||                  ||..|:|       |.| |:.....|.....|..|..:|:
plant   373 SSGSSGGNSRLPYEEILMDYYMERQPRGWTEPEGQWFVEPDGSGHYSRRDGYYDGFPGSPALRSR 437

  Fly   690 NQQQQMANGKRNGTGG--------------NSAKPSPAKIKLVGASIVTSKLSHPKPASLMIART 740
            .:.||..|..|..:.|              ..|.|.|               |||.|.|....|.
plant   438 VEMQQRRNAARTKSCGPQLADVGSFQQSWHQRAAPQP---------------SHPGPRSRSQPRA 487

  Fly   741 VRPTT 745
            ..|.|
plant   488 PPPET 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL23NP_523813.1 PTZ00054 2..139 CDD:185418
AT5G46160NP_851140.1 Ribosomal_L14 49..172 CDD:425547
Blue background indicates that the domain is not in the aligned region.

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