DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13531 and Spg11

DIOPT Version :10

Sequence 1:NP_611726.1 Gene:CG13531 / 37627 FlyBaseID:FBgn0034786 Length:1815 Species:Drosophila melanogaster
Sequence 2:XP_017447229.1 Gene:Spg11 / 311372 RGDID:1562529 Length:2434 Species:Rattus norvegicus


Alignment Length:2046 Identity:473/2046 - (23%)
Similarity:775/2046 - (37%) Gaps:545/2046 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 WR---GISEVTIIKEVATKGEHIDLCMEYWAQKR------------KIPVSEYRHYFYDVVQAYV 67
            |:   .|.|....:||.|..|.     :.|.:.|            :||.::   .|:.:.....
  Rat   651 WKPGDAIDESDENEEVLTVKEG-----QVWEELRSEEVIADAILNNRIPEAQ---TFFRITGHSA 707

  Fly    68 QRL--------------LSERLVCKAEDVIRNVDRDVKCFFFQFACECQDEELSEFVLDHLRSRE 118
            |||              |.:..|.:|..::||:...|:....:.:....|:.:.:|:::.|:.:|
  Rat   708 QRLEELVRIGLDLAFDSLKKNSVEEASRLLRNMGFSVEDELLKISFYTTDKNIRDFLVEILKEKE 772

  Fly   119 PLM--------------------YEQEEPVLAY------------HWSLVQQLREC----EALVA 147
            ...                    :::..|:.|:            |.|::....:|    |....
  Rat   773 CFSEKERRTVDFVHQAERLYSGHFQENAPMQAFPRYWIKEQDCFKHKSVLDTFLKCDTKDEFTKQ 837

  Fly   148 KHRTQLPRVHIEAMMTLPEQALQLLLVELYFANGNESLLGSLSKDMVWQHLVDSDEQAKLQRWCR 212
            .||..|...|.....|.....|..:..|.|.|:..|:|         |:||....:.:.:..|. 
  Rat   838 DHRIALNWAHWWDRQTQECILLPRISSEEYKAHSPEAL---------WRHLTARHDWSSISLWM- 892

  Fly   213 LQEEGFVSQETLSPLEQSFTAW-KIDATMYEYAVEELQQPSEVLRNF----FARAGYFFMDESED 272
               |.|.:|||:|| :||  .| .:.|.:    :|:....|..:||.    .||.|.|...|.||
  Rat   893 ---EEFQAQETVSP-QQS--KWPPLSAAV----IEQNTCCSRHMRNAILDQLARCGIFLASELED 947

  Fly   273 IPSLLRRLCTMECLGKHADLLSRQ------------PLAKYLLDRGQYSLLLM-----ECVPIAS 320
            ...||.||..:.  |...|.|..|            .:..|.|:.|...||.:     :..| .:
  Rat   948 FELLLLRLSRIG--GVMQDALPVQSYRSSAGCNFDSQVILYCLEHGLQHLLYVYLDYYKLSP-GN 1009

  Fly   321 LELLAGTETHQ-EPLINLIVDIK--TNSLTENE-GFELISKSVQAYLEKTHDTVDS--FEGHPLL 379
            ...|...|.|: .|.:..:|..:  :::||:.: .|:....:.|..:.....:|.|  .|||.||
  Rat  1010 CPFLEKKELHEAHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQISIPTNQASVSSMLLEGHTLL 1074

  Fly   380 ----TFYDFLG---------QEPSVRSLEGFLTSTNLGRVPYLKSLIARFDHGPTSCNFGLPTAH 431
                |.|...|         .|..::.::..|....|...|.||:.:......|:.    ||:..
  Rat  1075 ALATTMYAPGGVSQVIQHEDSENCLKKVDPQLLKMALTPYPKLKAALFPQCTAPSI----LPSDI 1135

  Fly   432 DLF--------------MKFKHVNLPLLATAGHGELVCFSNARLSQRYARKSQLNYTHYLKQQRS 482
            .|:              ..::..|...:..|. |:|..||:..|..:||...||:||:||...|.
  Rat  1136 TLYHLIQSLPPFDPSRLFGWQSANTLAIGDAA-GQLPHFSSPDLVSKYAVVEQLSYTYYLHHGRP 1199

  Fly   483 AYAVYYLITEQL-------QLYGQITKTQLFHACETVTQIALQHAGDDELVTHCVACCEMLGFDT 540
            ::|....:.::|       ||..|:.|       |..| :.|....:..:...||...|:||..:
  Rat  1200 SFAFGTFLVQELIKSKTPKQLIQQVGK-------EAYT-LGLSSFHNPSVGAACVCFLELLGLSS 1256

  Fly   541 QPLR---------------------SFL--LLQRKLPKCETGQ--SYSELL-----GEWD----R 571
            ..||                     ||:  .|..||.|...|.  :..|||     |.||    :
  Rat  1257 LKLRVDLKMANVVLGSRRRNEDAHPSFIRESLAEKLSKLADGDRATTEELLVLLEEGVWDSIEQQ 1321

  Fly   572 DLVEMLEANPSEFPLELYQSLMRLAIRDTPGKLPMDLLKRYASKNNWWHLLLVFQFFDLPLSELK 636
            ....:...:.|::.|.|...::.      ..||.:..|:..|..|:|...|:..|..:....|::
  Rat  1322 GFNRLSSESSSQWSLVLQFCMLH------DMKLSVSYLRECAKANDWLQFLVHSQLHNYHPEEVE 1380

  Fly   637 KLLPHFKSSPIGVHLLRALSYESSGDRHHKRTLQRPTRRSGETQTNSSQETMTNSSHSSNQDSSV 701
            .||.:|  ||:                     ||...:.:.|..::.|         .|..||.:
  Rat  1381 TLLQYF--SPV---------------------LQSHLKLASEKLSSGS---------ISKDDSCL 1413

  Fly   702 QQLQRNTDQSLCTLLTHTARQDVFAII-LCSTNSLPDELIATTPKFLEMMVGNSSHCSSINLLRH 765
            |:||:|.:.|           |.|.|: .||..|                   :|.|.   ||..
  Rat  1414 QELQKNKETS-----------DFFEILHRCSDES-------------------ASWCW---LLAE 1445

  Fly   766 CIRQELPILAVLAATISEQNRDWCWIVW------------------LSVASGQWSLQLQEASKVR 812
            .:|..:|||:|||:.|...:...|..||                  :||....|||         
  Rat  1446 AVRHRVPILSVLASCIQGASAVPCLCVWIVTSVEDKVAAEAIEHIQISVEDHHWSL--------- 1501

  Fly   813 DENRSEWVWSVIRGAVAGGHLNALLHSLEIFHPDCKLTHLCRFLQLTGHQEDFSDATIVELRQFF 877
             |:.| .:|   |..:....::.|:....:|..|..|..:....:|....:::..|. |:|.:|.
  Rat  1502 -EDLS-IIW---RTVLTRRKIHTLIRGFRLFIKDSPLLLIMEMYELCVFFKNYGKAK-VKLVEFQ 1560

  Fly   878 FSWSQ-DSVALPLCGPLPRKQLMQRSIGLLLI---QLQSNFDC--ILQ-----QQRFLECICRSD 931
            .|... |:||..:...:|...:.::...||.:   |.::.::.  :||     :|.|      ||
  Rat  1561 KSLEMLDTVATRVLPVIPATWMREQVCFLLKLMPQQCETQYELQKVLQLFVGMEQLF------SD 1619

  Fly   932 VGDICDLLDFCLLHKVFGVAATWLRELSIDLEQLGRRDSPEYKRLVDALTEARAYEEALQLATLL 996
            ..|:..|.....:.|...:..:.....|...|.|.|    |.:.:::.|.....:..|.::|.|.
  Rat  1620 GPDVQKLYRLSQVLKDTPITISPAVISSYSTESLQR----ECRSILEKLKADGQFAVARRVAELA 1680

  Fly   997 QLPLTDIVYGKWMTE-----------LEAGQL----RPHEEYEKDIQQHALAPAILVNFLLQAAS 1046
            .||:..:|..:...|           |:..:|    :.||.::|:...:..|.:.   |..||..
  Rat  1681 SLPVDGLVIEQLTQEMQMLTHTQQWSLKQARLDFWRKCHENFKKNSVSNRAASSF---FSSQAPE 1742

  Fly  1047 V----VGQVSLRRYELLQSTLGVIKKHHLFPNESF---DRDQIEYDMVLCYLQ------LPEEQL 1098
            .    ..|.||....||.:..|    |.|...|..   :.:::|..:.||.:.      ..||..
  Rat  1743 ASEHPAEQGSLEERHLLLTLAG----HWLAQEEPVPVEELEELEKQIWLCRIAQHTCGGAEEETK 1803

  Fly  1099 PQLSIYH------------SEYFEQIMLQERCVLYKSFSELK--------ELAGIDDLSIADKTV 1143
            |.||.:.            ||:              |||:|.        :|.|:....:.:.|:
  Rat  1804 PSLSQHKLAPAELSSDSSASEF--------------SFSKLAALNTSKYLDLNGLPSKEMCENTL 1854

  Fly  1144 LTSEMEDRLNTLLNTLLDKGDIVEALRLQELFEFRPNDLRFIVFAMALAEGMTSISNLSSKERQL 1208
            ...|.|. ||||:..|||.|.:.||.|:...|.....||..::...|||....|:.:|.|:.|.|
  Rat  1855 EHREQES-LNTLIGQLLDGGCVHEASRVCRYFRVYSQDLVLLLHCRALASAEASMEDLHSEIRAL 1918

  Fly  1209 LG------EIEKSAFPKFNRITLNQNVITRWDSDLSDTCSDSVAMEFEEIPSKEKQQTLDTLLGI 1267
            |.      ::|....| ..::..|..:       ||.:..||::..... |:.|..::|.||:  
  Rat  1919 LSNATLPEDLESPGVP-LRKVHSNMCL-------LSASSLDSLSFAMVP-PTDEVARSLQTLI-- 1972

  Fly  1268 GSKLKYGVELGRRIVLAYRAAMYLDKEYLDVLRTKDTGILLKSAAA----EDCLQRLLVVSDIQI 1328
             |:..:|.:..|:::..|..|..|...|.|| .|:|:..:|::..|    :.|.|     :.:.|
  Rat  1973 -SRCLHGKDYCRQVLCLYELAKELGCSYGDV-ATRDSEAMLRAILASQRPDRCRQ-----AQVFI 2030

  Fly  1329 STR-MTPKEIAECLALELTTCIVRPRFYIFHAREQPRNALRNADLWGHSIDRDFHLFLELAPNST 1392
            :|: :.|..:||.:|.|:|.                                      ||...|.
  Rat  2031 NTQGLEPDTVAELVAEEVTR--------------------------------------ELLTPSE 2057

  Fly  1393 MLGNCLLEYCDALKTYRRYQEGKPF---EETEAFENLSKII---TLYGL----PTPS-PTGTMSG 1446
            ..|                 |.:||   ||::.|..|:.:.   ||.|:    ..|| |.|.:| 
  Rat  2058 GAG-----------------EKQPFNLAEESQTFLQLTALCQDRTLVGMKLLDKIPSVPHGELS- 2104

  Fly  1447 IPQVLSHKKQNQIYVELLIKAHLCFVHECSMEGIVSVLQKAKAL-NTKLAQAKSWSLIVRLLIGI 1510
                        ...||||.||.||...|.||||:.|||.|:.| :..||..:.:.|:||||.||
  Rat  2105 ------------CTTELLILAHHCFTCACYMEGIIRVLQAARMLTDNHLAPNEEYGLVVRLLTGI 2157

  Fly  1511 ARYREMFYCFDSLIENEQFESLLGQFDEDQKGGLRQAILSYLREYQPKNGKELLRLAALHFLMYK 1575
            .||.||.|.||.|.:...||.|:.: ..|..|.|:.|:|.|::...| ...|...:.||.|.|.:
  Rat  2158 GRYNEMTYIFDLLHQKHYFEVLMRK-KLDPTGTLKTALLDYIKRCHP-GDSEKHNMIALCFSMCR 2220

  Fly  1576 ELAEMWTTEAQEIVTKIQAFAAQS----NKLKCSVEVQTLLQQALENYTHATENYLLDNKLLLAQ 1636
            |:.     |..|....||....:|    ..||...:::.||.:||.....|.|:|..|:.:..|.
  Rat  2221 EIG-----ENHEAAACIQLKLIESQPWEESLKDGAQLKQLLLKALTLMLDAAESYAKDSCVRQAL 2280

  Fly  1637 QSVSRAELMAMQLDLCNKALEKRHSNNANHLCVSVIGVRSREQFRELVNVHLSVP---QALILSR 1698
            ......:|:.:|:...|        :..|.:.:::       ..::|::..:::|   ||.|::.
  Rat  2281 HCNRLTKLITLQIHFLN--------SGQNTMLINL-------GHQKLMDCIMTLPRFYQASIVAE 2330

  Fly  1699 AYGYDISWSEAILSQFVVLQG-VNYLQEYLCHQRINDDVIEQIVKGYLLHIQSNATNSKQEESMV 1762
            ||.:...|:| :|.|.|:|:| .:||:|:...:.:..::.|.|.|.|..|    ....:..|::.
  Rat  2331 AYDFVPDWAE-VLYQQVILKGDFSYLEEFKQQKLLKPNIFEDISKKYKQH----QPTDRVTENLK 2390

  Fly  1763 QLVGLIKSVVLKYKLASILGFKSIVMSLIND 1793
            :|:...:.:.|.||||....|..||..|:.|
  Rat  2391 KLLSYCEDIYLYYKLAYEHKFFEIVNMLLKD 2421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13531NP_611726.1 Spatacsin_C 1393..1746 CDD:464236 108/372 (29%)
Spg11XP_017447229.1 Spatacsin_C 2086..2378 CDD:464236 99/327 (30%)

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