DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12490 and vglu-3

DIOPT Version :9

Sequence 1:NP_611722.2 Gene:CG12490 / 37623 FlyBaseID:FBgn0034782 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_499277.1 Gene:vglu-3 / 176442 WormBaseID:WBGene00011556 Length:544 Species:Caenorhabditis elegans


Alignment Length:469 Identity:119/469 - (25%)
Similarity:204/469 - (43%) Gaps:40/469 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ALLIFLNITTVFIGRLNVGVSVVAMTNAETTNPNFP---------EYDWTEAEKSYIFSSFFWGY 73
            |:|........|..|.|.||:...|.|      ||.         |:.||.||...:.||||:||
 Worm    51 AILAHFGFAISFGIRSNFGVAKNRMVN------NFTDAYGEVHEREFLWTGAEVGMMESSFFYGY 109

  Fly    74 ILTQFIGGYLCKRFGVKSVMFWGVFVSGVCSALTPLFIGFGGWQAYCGI-----RVVMGLAQGLV 133
            ..:|...|.|..:|....:...|:.|:...:.|:.:...|   ..|..|     :.|.|||.|::
 Worm   110 AASQIPAGVLAAKFAPNKIFMLGILVASFMNILSAISFNF---HPYTDIFVMVVQAVQGLALGVL 171

  Fly   134 FPCIHHHLAKWSPPAERNRLGALSHTGMECGNVSAMFLSGMIAKSAIGWPGISYVSAGLAFAWCA 198
            :|.:|.....|:||.||::|...:.||...|.::.:..|..:. |...|....||...:...|..
 Worm   172 YPAMHGVWKFWAPPLERSKLATTAFTGSSVGVMTGLPASAYLV-SHFSWSTPFYVFGVVGIIWSL 235

  Fly   199 IWFVFAADNAVESRYITQEELHYIESSLKHNEDYHKTVIPVPWMAIWTSAPFLALTLTRCCATWG 263
            ||...::.:.....||:.:|...:...:......:.::..:||..:.||:...|:.:...|.:||
 Worm   236 IWMYVSSHSPETHGYISDDEKKQVTEKIGDVAVKNMSLTTLPWRDMMTSSAVWAIIICTFCRSWG 300

  Fly   264 LSTLQAQIPTYMNGVLDMDMKSNAFFSALPFLAMWIMSYVYLIIADVLLAGNRLSLTALRKTFNS 328
            ...|.....|||..||.:|:|::.|.|..|...|.|::.....:.|.|.:..::|..|:||:.|:
 Worm   301 FFLLLGNQLTYMKDVLHIDIKNSGFISIFPQFGMCIVTLATGQLCDYLRSSGKMSTEAVRKSVNT 365

  Fly   329 LAFWIPCATLIGIGFLDQEQKNLAIALMTISVGVNSGATIGSSLNTIDLSPNHASILMGILNTAV 393
            ..|.:....|..:.|:  ....:|:..:.|:...:.....|.::|..|::|.:|.|||||.| .:
 Worm   366 FGFTVEAMMLGCLAFV--RDPVIAVTCLVIACTGSGSVLSGFNVNHFDIAPRYAPILMGIAN-GL 427

  Fly   394 TVVPIVTPLIVGVIVHEDDNRAEWQIVFIIAAVLFFVGNSVYLYFGTAVSQPWDAED-------- 450
            ..|..|..::...:.::  |...|:.||::|..:...|...:|.|......||..|.        
 Worm   428 GAVAGVGGMVTNTVTYQ--NPDGWKWVFLLAMAIDIFGVIFFLIFAKGDVLPWAREPEKEETFNE 490

  Fly   451 ---YLTVKVPELAK 461
               .:::||..|::
 Worm   491 FVRRMSIKVRSLSR 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12490NP_611722.2 2A0114euk 14..450 CDD:129972 115/445 (26%)
MFS 54..438 CDD:119392 101/388 (26%)
vglu-3NP_499277.1 2A0114euk 47..485 CDD:129972 116/448 (26%)
MFS 52..471 CDD:119392 111/433 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2532
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000034
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.