DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stl and Adamts4

DIOPT Version :9

Sequence 1:NP_001097423.1 Gene:stl / 37619 FlyBaseID:FBgn0086408 Length:1136 Species:Drosophila melanogaster
Sequence 2:NP_076449.1 Gene:Adamts4 / 66015 RGDID:621242 Length:851 Species:Rattus norvegicus


Alignment Length:1025 Identity:234/1025 - (22%)
Similarity:346/1025 - (33%) Gaps:336/1025 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SSSSSSTSSTNPKS--VNIELRR------KRSLHYNGIELDKNTLVGHLREHERALIFGSRSPEE 85
            |:.:.|....:|:.  ....|||      .|::.::|:|           ..::.|:..|..|  
  Rat     9 STGTMSRMGLHPRRGLTGHRLRRLQPCLPPRTVPFSGLE-----------RWQQLLLLASLLP-- 60

  Fly    86 APEFKLVHLAQQRPEEQQRLEERKRPGEAEQHGGNPHQRRQRRSLPSEDGNGPLPPEEEEQEAGE 150
                 |...|...|.|::.:...|..|.:...|.....|...| ||:   .|.:...|.||:.|.
  Rat    61 -----LAWSASPLPREEEIVFPEKLNGSSIIPGSGVPARLLYR-LPA---FGEILLLELEQDPGV 116

  Fly   151 DVEARLQLQ---QSPQLIDDAFIFIRRTENGTQF---VEHSPQLLKRLERCFYRSPAAALDLCEP 209
            .||. |.:|   |:|:::..|       |.||..   :...|:.:..|.             .:.
  Rat   117 QVEG-LTVQYLGQAPEMLGGA-------EPGTYLTGTINGDPESVASLH-------------WDR 160

  Fly   210 GNVRGVFQQNGSDLVIHPLP-----ARFGTGTHVLYQARVDKSGGGYSEASSRRTASPLDSQLQF 269
            |.:.||.|..|::|.:.||.     :..|.|.|:|                  |..||..::   
  Rat   161 GALLGVLQYRGAELHLQPLEGGALNSAGGPGAHIL------------------RRKSPASNR--- 204

  Fly   270 EPDAEEFNEPRRRLRAQSQLQSPLRLRFQPRHHHPHQHHQQRRRRYIGDAPRSRWSDIPEELFIE 334
                    .|...::|.|...||:               .:|.:|:   |..||        |:|
  Rat   205 --------GPICNVKAPSGSPSPI---------------SRRNKRF---ASLSR--------FVE 235

  Fly   335 TAIFVDSDLYA-HMQKNFPTNTESKVVSFLLAMINGVQLLYHHPTLGRRINFVLKRLEIWKSWDP 398
            |.:..|..:.| |         .:.:..:||.::......:.||::...:|.|:.||.|..|...
  Rat   236 TLVVADDKMAAFH---------GAGLKHYLLTVMAAAAKAFKHPSIRNPVNLVVTRLVILGSGQE 291

  Fly   399 PGLVRSRDVENYLNSFCKWQEKLNPFSDADPLHYDHALVLTGLDLVTYDKGKANSQVVGMATVKG 463
            ...|.....:. |.|||.||:.|||.:|:||.|:|.|::.|..||.    |.:....:|||.|..
  Rat   292 VPQVGPSAAQT-LRSFCTWQKGLNPPNDSDPDHFDTAILFTRQDLC----GVSTCDALGMAGVGT 351

  Fly   464 MCTSIYSCTINEAKHFESVFVVAHEIGHNLGMRHDAKEISC-------DPTMHIMSPKLG--SGK 519
            :|....||.|.|....:|.|..|||:||...|.||..: .|       ..:.|:|:|.:.  ..:
  Rat   352 VCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSK-PCANLNGQGSSSRHVMAPVMAHVDPE 415

  Fly   520 VTWSKCSRTYLEDFLMDPQAECLFDRDSFAGPWDHTAGGRLPGERFNANQQCMLRFGKNFMQAST 584
            ..||.||..::.|||.:....||.|:.........|    .||:.::|::||.|.||.:      
  Rat   416 EPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVT----FPGKDYDADRQCQLTFGPD------ 470

  Fly   585 QSKMEICRDLHCRQDGLP------W------------TSH-PALEGTECGPNMWCRGGTCEARSS 630
                    ..||.|  ||      |            |.| |..:||.|||...|.||.|     
  Rat   471 --------SSHCPQ--LPPPCAALWCFGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRC----- 520

  Fly   631 KQGSYSALKSWPPEHIPEATHEKIIRHEPNRIPPLLHDYNPMDNELPGSPSNWGEWSEPSACESG 695
                         .|:.:                 |.|:|     :| ....||.|.....|...
  Rat   521 -------------LHVDQ-----------------LKDFN-----IP-QAGGWGPWGPWGDCSRT 549

  Fly   696 CLYGQSRRLLEGSTGLRTLNRSCL-----NFPSRCIGRDRRFVTCNTPQCHKVPVQTINDFATQV 755
            |           ..|::..:|.|.     |....|.||...|.:|||..|......|..:  .|.
  Rat   550 C-----------GGGVQFSSRDCTKPVPRNGGKYCEGRRTPFRSCNTKNCPHGSALTFRE--EQC 601

  Fly   756 CMQARKSD------------PELTGEGQQLPSTLDASCKIFCRTRTNG----TKSRRWTFPDGTT 804
            .....::|            |..||...:      ..||:.|:.|..|    .:.|   ..|||.
  Rat   602 AAYNHRTDLFKSFPGPMDWVPRYTGVAPR------DQCKLTCQARALGYYYVLEPR---VADGTP 657

  Fly   805 CKAKQHNPEDITYCISGRCERFSCDNSTSNFFKMD--------SSFC--EARSVRPTRDSSDQES 859
            |     :|:..:.|:.|||....||....:..|.|        .|.|  ::.|.:..|.......
  Rat   658 C-----SPDSSSVCVQGRCIHAGCDRIIGSKKKFDKCMVCGGNGSSCSKQSGSFKKFRYGYSDVV 717

  Fly   860 RQQTNRQRYAERQEG-----------KPQKNHY--ENEVAKRPS--------------------- 890
            .....|.....||:|           |.....|  ..|....||                     
  Rat   718 TIPAGRTHILVRQQGGSGLKSIYLALKLADGSYALNGEYTLMPSSTDVVLPGAVSLRYSGRTAAS 782

  Fly   891 -----YG------------QGNHINAPASPYKRRNYHKPYP-PEIPRPPP 922
                 :|            .||    |.:...|.::..|.| |..|||||
  Rat   783 ETLSGHGPLAQPLTLQVLVAGN----PQNVRLRYSFFVPRPVPSTPRPPP 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stlNP_001097423.1 Pep_M12B_propep <155..239 CDD:279848 21/94 (22%)
ZnMc_ADAMTS_like 331..543 CDD:239801 67/221 (30%)
Reprolysin 332..545 CDD:279729 68/222 (31%)
TSP1 683..741 CDD:214559 16/62 (26%)
Adamts4NP_076449.1 Pep_M12B_propep 92..195 CDD:279848 32/127 (25%)
Reprolysin 232..442 CDD:279729 70/232 (30%)
ZnMc_ADAMTS_like 232..439 CDD:239801 68/229 (30%)
ADAM_CR 452..523 CDD:301627 26/104 (25%)
TSP1 545..589 CDD:214559 13/54 (24%)
ADAM_spacer1 701..816 CDD:283607 16/118 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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