DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stl and Sspo

DIOPT Version :9

Sequence 1:NP_001097423.1 Gene:stl / 37619 FlyBaseID:FBgn0086408 Length:1136 Species:Drosophila melanogaster
Sequence 2:NP_001007017.1 Gene:Sspo / 474348 RGDID:1549716 Length:5141 Species:Rattus norvegicus


Alignment Length:1242 Identity:226/1242 - (18%)
Similarity:343/1242 - (27%) Gaps:530/1242 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SPEEAPEFKLVHLAQQRPEEQQRLEERKRP--------------GEAEQHGGNPHQRRQRRSLP- 131
            :|.|||      .|...|.|....|...:|              |...|..|:........||. 
  Rat  2095 APVEAP------TAGPGPREDAYAEWHTQPLYLQLDLLWPRNLTGIMVQRAGSSAAYISNLSLQF 2153

  Fly   132 SEDG----------NGPLPPEEEEQEAGEDVEARL----QLQQSPQLIDDAFIFIRRTENGTQFV 182
            |.||          :..|||.:...|:...:...:    |:.|:.        :||...:|:...
  Rat  2154 SSDGLQWHSVLNSLSSTLPPPKPSPESSNHMVPEVWTFDQMVQAR--------YIRVWPHGSHLR 2210

  Fly   183 EHSPQ---LLKRLERCFYRSPAAAL-----DLCEPGN--VRG------VFQQNGSDLVIHPLPAR 231
            :::.|   |...|..|....|.|.|     ..|..|:  ::|      |..::||          
  Rat  2211 DNNQQDIFLWVELLGCKPVPPLAPLCPGTRHRCANGDCALKGGPCDGAVDCEDGS---------- 2265

  Fly   232 FGTGTHVLYQARVDKSGGGYSEASSRRTASPLDSQLQFEPDAEEFNEPRRRLRAQSQLQSPLRLR 296
                         |:.|.|...||   |||.:.|              ..|..|.|..| |.:..
  Rat  2266 -------------DEEGCGPLRAS---TASRVHS--------------TARTPALSPTQ-PGKFP 2299

  Fly   297 FQPRHHHPHQHHQQRRRRYIGDAPRSRWSDIPEELFIETAIFVDSDLYAHMQKNFPTNTESKVVS 361
            |.||.......|||.::    ::|                              .|:...|...|
  Rat  2300 FHPREGLADMEHQQPKQ----ESP------------------------------MPSAGVSPSAS 2330

  Fly   362 FLLAMINGVQLLYHHPTLGRRINFVLKRLEIWKSWDPPGLVRSRDVENYLNSFCKWQEKLNPFSD 426
            ..|..::|..:    .||.....|            ||||                 :.|:|...
  Rat  2331 EGLLPVSGQSM----QTLTTTSTF------------PPGL-----------------KSLHPGMA 2362

  Fly   427 ADPLHYDHALVLTG-----------LDLVTYDKGKANSQVVGMATVKGMCTSIYSCTI-NEAKHF 479
            |..:|..|: |:.|           ..|:....|:....|:|....:.:|.....|.. ::.:|.
  Rat  2363 AVTVHSPHS-VMPGTPVGQSVSPRPFPLMRCGPGQVPCDVLGCVEQEQLCDGREDCLDGSDEQHC 2426

  Fly   480 ES--VFVVAHEI--------------------GHNLGMRHDAK-EISC-------DPTMHIMSPK 514
            .|  .|.|....                    |..|.:.|... :::|       |....:::|.
  Rat  2427 ASPEPFTVPTTALPGLPASRALCSPSQLSCGSGECLPLEHRCDLQVNCQDGSDEDDCVDCVLAPW 2491

  Fly   515 LGSGKVTWSKCSRTYLEDFLMD---------PQAECLFDR--------------DSFA--GPWD- 553
            .|     ||.|||:.....:..         |...||.|:              .::|  |||: 
  Rat  2492 SG-----WSDCSRSCGLGLIFQHRELLRPPLPGGSCLLDQLRSQPCFVQACPVAGAWAKWGPWEP 2551

  Fly   554 ---HTAGGR---------------------------------LPGE------RFNAN-------- 568
               ...||.                                 .||:      |.:.|        
  Rat  2552 CSVSCGGGHQSRQRSCVDPPPKNGGAPCPGPSHEKVLCNLQLCPGDTDCEPGRVHVNAELCQKGL 2616

  Fly   569 -----------------------------------------QQCMLRFGKNFMQAS--------- 583
                                                     .:|....|:..||..         
  Rat  2617 LPPCPPSCLDPEANRSCSGHCVEGCRCPPGLFLQDSHCLPLSECPCLVGQKLMQPGLAFLLDNCS 2681

  Fly   584 ---TQSKMEICRDLHCRQD-----GLPWTS--HPALEGTECGPNMWCR------------GGTCE 626
               .:|.:.:|:...|.|.     ..|||:  |      .||..:..|            |..||
  Rat  2682 QCICESGILLCKPAACSQSCGWSAWSPWTACDH------SCGSGVRARFRSPTNPPAAFGGSPCE 2740

  Fly   627 A-RSSKQGSY----SALKSWPPEHIPEATHEKII-------RHEPNRIPPLLHD---------YN 670
            . |...|..|    :.:..|.|.....:..:..:       |.:.:|:.|...|         ..
  Rat  2741 GDRQELQACYTDCGTDIPGWTPWTSWSSCSQSCLVPGGDPGRRQRSRLCPSSRDTFCPGEATQEE 2805

  Fly   671 PMDNELPGSPSNWGEWSEPSACESGCLYGQSRRLLEGSTGLRTLNRSCL-NFPSR--CIGRDRRF 732
            |....|...||.||.|:..|||.:.|           :.|::|..|||. :.|..  |:|...:.
  Rat  2806 PCSPSLCPVPSAWGLWASWSACSASC-----------NGGIQTRGRSCSGSAPGNPVCLGPHTQT 2859

  Fly   733 VTCN----TPQCHKVPVQTINDFA----------TQVCMQARKSDP--ELTGE---GQQLPSTL- 777
            ..||    |.||   |...:...|          .|:|:   ..||  |.||.   |...|..| 
  Rat  2860 RDCNVHPCTAQC---PGNMVFRSAEKCLEEGGPCPQLCL---AQDPGVECTGSCAPGCSCPPGLF 2918

  Fly   778 --DASC--KIFCRTRTNGTKSRRWTFPDGT---------TCKAKQHNPEDITYCISGRC------ 823
              :|||  :..|..:.:|.     .:..|.         ||.:.:      ..|.|.||      
  Rat  2919 LHNASCLPRSQCPCQLHGQ-----LYAPGAVARLDCNNCTCSSGE------MVCTSERCPVACGW 2972

  Fly   824 ------------------ERFSCDNSTSNFF--------KMDSSFCEARSVRPTRDSSDQESRQQ 862
                              .||....:....|        .:|:.||   ::||.:......|   
  Rat  2973 SPWTPWSPCSQSCNVGIRRRFRAGTAPPAAFGGAECRGPNLDAEFC---TLRPCQGPGAAWS--- 3031

  Fly   863 TNRQRYAERQEGKPQKNHYENEVAKRPSYGQGNHINAPASPYKRRNYHKPYPPEIPRPPP----- 922
                  :......|....|.|.     :.|.|.|.....|....:....|.|...|:...     
  Rat  3032 ------SWTPCSVPCGGGYRNR-----TQGSGRHSPVEFSTCSLQPCAGPVPGVCPKDQQWLDCA 3085

  Fly   923 --PASASLIALDRSSSSESEWVAHPGCHSNCMTDSKGVQGVTSRLTGVESIQLCSYR-------- 977
              |||.:.::..|    |:....||||:  |::   |:..:.:.....:... |::|        
  Rat  3086 QGPASCAHLSTPR----EANQTCHPGCY--CLS---GMLLLNNVCVPAQDCP-CAHRGRLHSPGS 3140

  Fly   978 --IQPCE 982
              |.|||
  Rat  3141 AVILPCE 3147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stlNP_001097423.1 Pep_M12B_propep <155..239 CDD:279848 18/103 (17%)
ZnMc_ADAMTS_like 331..543 CDD:239801 43/262 (16%)
Reprolysin 332..545 CDD:279729 44/263 (17%)
TSP1 683..741 CDD:214559 19/64 (30%)
SspoNP_001007017.1 VWD 192..341 CDD:214566
C8 393..468 CDD:285899
TIL 472..527 CDD:280072
VWD 556..716 CDD:214566
C8 769..826 CDD:285899
TIL 830..883 CDD:280072
VWD 1019..1168 CDD:278521
C8 1206..1276 CDD:285899
TIL 1280..1336 CDD:280072
LDLa 1381..1416 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1457..1491 CDD:238060
LDLa 1497..1528 CDD:197566
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1533..1567
Ldl_recept_a 1568..1604 CDD:278486
TSP1 1702..1753 CDD:214559
TSP1 1758..1812 CDD:214559
TIL 1822..1873 CDD:280072
TSP1 1917..1970 CDD:214559
FA58C 2070..2226 CDD:214572 29/144 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2087..2109 6/19 (32%)
FA58C <2111..2225 CDD:238014 22/121 (18%)
LDLa 2236..2270 CDD:238060 7/56 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2262..2335 27/147 (18%)
LDLa 2392..2426 CDD:238060 5/33 (15%)
LDLa 2449..2483 CDD:238060 4/33 (12%)
TSP1 2490..2538 CDD:214559 11/52 (21%)
TSP1 2543..2595 CDD:214559 6/51 (12%)
TIL 2618..2660 CDD:280072 0/41 (0%)
TSP1 2703..2752 CDD:214559 13/54 (24%)
TSP1 2760..2813 CDD:214559 8/52 (15%)
TSP_1 2819..2867 CDD:278517 16/58 (28%)
TIL 2871..2930 CDD:280072 16/64 (25%)
VWC_out 2932..2979 CDD:214565 8/57 (14%)
TSP1 2972..3023 CDD:214559 7/53 (13%)
TIL 3075..3127 CDD:280072 12/60 (20%)
TSP1 3240..3292 CDD:214559
TIL 3300..3350 CDD:280072
TSP1 3396..3439 CDD:214559
TSP1 3460..3504 CDD:214559
TIL 3514..3570 CDD:280072
TSP1 3633..3677 CDD:214559
TSP1 3810..3862 CDD:214559
TSP1 3879..3927 CDD:214559
TSP1 3945..3998 CDD:214559
TSP1 4003..4055 CDD:214559
TIL 4058..4113 CDD:280072
TSP1 4158..4208 CDD:214559
TSP1 4252..4303 CDD:214559
TSP1 4367..4418 CDD:214559
TIL 4422..4477 CDD:280072
TSP1 4611..4659 CDD:214559
TIL 4673..4719 CDD:280072
TSP1 4763..4812 CDD:214559
TIL 4814..4868 CDD:280072
TIL 4920..4978 CDD:280072
VWC 4980..5035 CDD:302663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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