DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stl and Adamts18

DIOPT Version :10

Sequence 1:NP_001097423.1 Gene:stl / 37619 FlyBaseID:FBgn0086408 Length:1136 Species:Drosophila melanogaster
Sequence 2:XP_038953789.1 Gene:Adamts18 / 361412 RGDID:1560118 Length:1253 Species:Rattus norvegicus


Alignment Length:1076 Identity:253/1076 - (23%)
Similarity:389/1076 - (36%) Gaps:290/1076 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 GEDVEARLQLQQSPQLIDDAFIFIRRTENGTQFVEHSPQLLKRLERCFYRS-------PAAALDL 206
            |:|:  .|:|:.|..|.....:.:...:..::..|  |.:   :::|.|:.       .:.|:..
  Rat   139 GQDL--HLELKPSALLSSHFIVQVLGKDGASETRE--PAV---VQQCLYQGFIRNDSLSSVAVST 196

  Fly   207 CEPGNVRGVFQQNGSDLVIHPLPARF----------GTGTHVLYQARVDKSGGGYSEASSRRTAS 261
            |  ..:.|:.:...::.:|.|||...          |...||||:...:|....|.:..:.:...
  Rat   197 C--AGLSGLIRTRDNEFLISPLPQLLAQQHNYSLPAGHHPHVLYKRTAEKRVRRYQDYPASQRTY 259

  Fly   262 PLDSQLQFEPDAEEFNEPRRRLRAQSQLQSPLRLRFQPRHHHPHQHHQQRRRRYIGDAPRSRWSD 326
            |..|.....|.::......|..|.|.|.....|.::.|:  .|.:....|...| |.|.|.|.|.
  Rat   260 PGHSPSHTPPASQSQETEYRHRRWQKQHFCGRRKKYAPK--PPAEDAYLRFDEY-GGAGRPRRSA 321

  Fly   327 IPEE--LFIETAIFVDSDLYAHMQKNFPTNTESKVVSFLLAMINGVQLLYHHPTLGRRINFVLKR 389
            ...:  |.:||.:..|:       |....:.:..|.:::|.::|.|..|:...|:|..||.|:..
  Rat   322 RKSQKGLNVETLVVADA-------KMVEKHGKDDVTTYILTVMNMVSSLFKDGTIGSDINIVVVS 379

  Fly   390 LEIWKSWDPPGLVRSRDVENYLNSFCKWQEKLNPFSDADPLHYDHALVLTGLDLVTYDKGKANSQ 454
            |.:.:. :|.||:.:...:..|||||:||..|   ...:...:|||::|||.|:.::.....:: 
  Rat   380 LILLED-EPGGLLINHHADQSLNSFCQWQSAL---VGKNGKRHDHAILLTGFDICSWKNEPCDT- 439

  Fly   455 VVGMATVKGMCTSIYSCTINEAKHFESVFVVAHEIGHNLGMRHDAKEISCDPTM-HIMSPKL--G 516
             :|.|.:.|||:...||||||.......|.:|||.|||.||.||.:...|.... :||||.|  .
  Rat   440 -LGFAPISGMCSKYRSCTINEDTGLGLAFTIAHESGHNFGMVHDGEGNPCRKAEGNIMSPTLTGN 503

  Fly   517 SGKVTWSKCSRTYLEDFLMDPQAECLFDRDSFAGPWDHTAGGRLPGERFNANQQCMLRFGKNFMQ 581
            :|..:||.|||.||:.||..|||.||.|.....|.:.:.  .:|||:.::|:.||..:||.....
  Rat   504 NGVFSWSSCSRQYLKKFLSTPQAGCLVDEPKQTGQYKYP--DKLPGQIYDADTQCKWQFGAKAKL 566

  Fly   582 ASTQSKMEICRDLHCRQDGLPWTSH-------PALEGTECGPNMWCRGGTCEARSSKQGSYSALK 639
            .|.....:||:.|.|.:.|     |       ||.|||.||.:||||.|.|              
  Rat   567 CSLGVMKDICKSLWCHRVG-----HRCETKFMPAAEGTVCGLSMWCRQGQC-------------- 612

  Fly   640 SWPPEHIPEATHEKIIRHEPNRIPPLLHDYNPMDNELPGSPSNWGEWSEPSACESGCLYGQSRRL 704
                           :|         |.|..|  ..:.|..|.|.:|||   |...|        
  Rat   613 ---------------VR---------LGDLGP--RPIHGQWSAWSKWSE---CSRTC-------- 640

  Fly   705 LEGSTGLRTLNRSCLNFPSR-----CIGRDRRFVTCNTPQCHKVPVQTINDFATQVCMQARKSD- 763
               ..|::...|.|.|...:     |.|..|.:..||...||:..:    ||..|.|.:..... 
  Rat   641 ---GGGVKYQERHCSNPKPQYGGKYCPGSSRIYKLCNINPCHENSL----DFRAQQCAEYNNKPF 698

  Fly   764 --------PELTGEGQQLPSTLDASCKIFCRTRTNGTKSRRWTF--------PDGTTCKAKQHNP 812
                    |....|.:.       .||::|       |:..:.|        .|||.|     :|
  Rat   699 RGWLYRWRPYTKVEEED-------RCKLYC-------KAENFEFFFAMSGKVKDGTPC-----SP 744

  Fly   813 EDITYCISGRCERFSC------------------DNSTSNFFKMDSSFCEARSVRPTRDSSDQES 859
            .....||.|.||...|                  ||||..|:|                 ....|
  Rat   745 HRNDVCIDGICEPVGCDHELGSKAVSDACGVCKGDNSTCKFYK-----------------GLYLS 792

  Fly   860 RQQTNR----------QRYAERQEGKPQKNHYENEVAKRPSYGQGN-HINAP------ASPYKRR 907
            :.:.|.          .|..|.||.:...::.......:..|..|. :|:.|      .:.::  
  Rat   793 QHKANEYYPVVTIPAGARSIEIQELELSSSYLAVRSLSQKYYLTGGWNIDWPGDFTFAGTTFE-- 855

  Fly   908 NYHKPY-PPEIPRPPPPASASLI--ALDRSSSSESEW---------VAHPGC----------HSN 950
             |.:|: .||....|.|.:.:|:  .|.:..:....|         |..|..          .|:
  Rat   856 -YQRPFNRPERLYAPGPTNETLVFEILTQGKNPGITWKYALPKVMNVTQPAAKRHHHTWRTVQSD 919

  Fly   951 CMTDSKG----VQGVTSR--LTGVESIQLCSYRIQP------CERLQTAAEY-------AEQTCA 996
            |.....|    ::.:..|  .|.|.| ..||.|.:|      |......|.:       ..::||
  Rat   920 CSVTCGGGYISIKAICLRDQNTQVNS-SFCSVRTKPATEPKLCNAFSCPAYWLPGEWSTCSKSCA 983

  Fly   997 RYRQ--KVRGLSGHGAQISASI--------------------------DEPDRSCRVGCQDEFIK 1033
            ..:|  |:|.:.....|...::                          ..|...|...| ...::
  Rat   984 GGQQSRKIRCVQKKPFQKEEAVLHSLCPVSTPTQVQVCNSHACPPEWSPGPWSQCSKTC-GRGVR 1047

  Fly  1034 YRYYLVNGRNGHFPPGTRCS----PVGKRYCVYGRC 1065
            .|..|.........|.:.||    |..:..||.|||
  Rat  1048 RREVLCTSPAAETLPESLCSSSPKPEAQEGCVLGRC 1083

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stlNP_001097423.1 ZnMc_ADAMTS_like 331..543 CDD:239801 76/214 (36%)
ADAMTS_CR_2 561..625 CDD:465496 26/70 (37%)
TSP1 683..741 CDD:214559 15/62 (24%)
Adamts18XP_038953789.1 Pep_M12B_propep 99..238 CDD:460254 20/107 (19%)
ZnMc_ADAMTS_like 328..529 CDD:239801 75/213 (35%)
ADAMTS_CR_2 546..613 CDD:465496 27/100 (27%)
TSP1 627..679 CDD:214559 16/65 (25%)
ADAMTS_CR_3 683..783 CDD:437068 25/122 (20%)
ADAMTS_spacer1 785..896 CDD:461796 21/130 (16%)
TSP1_ADAMTS 918..966 CDD:465950 12/48 (25%)
TSP1_ADAMTS 970..1026 CDD:465950 6/55 (11%)
TSP1_ADAMTS 1030..1083 CDD:465950 12/53 (23%)
TSP1_ADAMTS 1091..1150 CDD:465950
TSP1_ADAMTS 1159..1205 CDD:465950
PLAC 1220..1250 CDD:462560
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.