DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stl and Adamtsl3

DIOPT Version :9

Sequence 1:NP_001097423.1 Gene:stl / 37619 FlyBaseID:FBgn0086408 Length:1136 Species:Drosophila melanogaster
Sequence 2:NP_001101003.2 Gene:Adamtsl3 / 308787 RGDID:1305155 Length:1705 Species:Rattus norvegicus


Alignment Length:576 Identity:120/576 - (20%)
Similarity:174/576 - (30%) Gaps:231/576 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   630 SKQGSYSALKSWPPEHIPEATHEKIIRHEPNRIPPLLHDYNPM-------DNELPGSPSNWGEWS 687
            |.|||:          :.:.|.|:.          |.:.|:..       |.:..|:...||:||
  Rat    53 SPQGSF----------LEDTTGEQF----------LTYRYDDQTSRNAHSDEDKDGNWDAWGDWS 97

  Fly   688 EPS-ACESGCLYGQSRRLLEGSTGLRTLNRSCLNFPSRCIGRDRRFVTCNTPQCHKVPVQTINDF 751
            :.| .|..|..| ..||.|.|               ..|.|::.|:.||:...|   |... .||
  Rat    98 DCSRTCGGGASY-SLRRCLTG---------------RNCEGQNIRYKTCSNHDC---PADA-EDF 142

  Fly   752 ATQVCMQARKSDPELTGEGQQ-LPSTLD--ASCKIFCRTRTNGTKSRRWTFP---DGTTCKAKQH 810
            ..|.|  :..:|.:..|...: :|...|  |.|.:.|..|  |........|   |||.|     
  Rat   143 RAQQC--SAYNDVQYQGHYYEWIPLHNDPAAPCALKCHAR--GQSLVVELAPKVLDGTRC----- 198

  Fly   811 NPEDITYCISGRCERFSCDNSTSNFFKMDS--------SFCE----------------------- 844
            |.:.:..||||.|:...||....:..|.|:        |.|.                       
  Rat   199 NADTLDMCISGICQTVGCDRQLGSSAKKDNCGVCAGDGSTCRLVRGQTKVHLSPEKKEENVIAVP 263

  Fly   845 --ARSVRPT---------RDSSDQESRQQ---------------TNRQRYAERQEGKPQ------ 877
              :||||.|         ...:.|.||.:               ...|:.|:||..|..      
  Rat   264 LGSRSVRITVKGPALLFIESKTLQGSRGEHSFNSPGVFVVENTTIEFQKGADRQTFKIAGPLMAD 328

  Fly   878 ---KNHYENEVAK---------RP---------------SYGQGNHINAPAS---PYKR--RNYH 910
               |..|  .|||         :|               :.|.|..:|:...   ..||  .:::
  Rat   329 FIFKTRY--TVAKGSVVQFFFYQPISHQWRQTDFFPCTVTCGGGYQLNSAECMDIRLKRVVPDHY 391

  Fly   911 KPYPPEIPRPPPPASASLIALDRSSSSES--------------EWVAHP--GCHSNCMTDSKGVQ 959
            ..|.||..:|.|....  .::|...||:.              .|..:|  .|..:|   ..|:|
  Rat   392 CHYYPENVKPKPKLKE--CSMDPCPSSDGFKEIMPYDHFQPLPRWEHNPWTACSVSC---GGGIQ 451

  Fly   960 ---------GVTSRLTGVESIQLCSYRIQPCERLQTAAEYAEQTCARYRQKVRGLSGHGAQISAS 1015
                     .:.:.:..||..: |.|..:|         ...|||..:                 
  Rat   452 RRSFVCVEESMHAEILQVEEWK-CMYAPKP---------KVMQTCNLF----------------- 489

  Fly  1016 IDEPD------RSCRVGCQDEFIKYRYYLVNGRNGHFPPGTRCSPVGKRY----CV 1061
             |.|.      ..|.|.| ...::||..|.....|....|  |:|..|.:    ||
  Rat   490 -DCPKWIAMEWSQCTVTC-GRGLRYRVVLCINHRGQHVGG--CNPQMKLHIKEECV 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stlNP_001097423.1 Pep_M12B_propep <155..239 CDD:279848
ZnMc_ADAMTS_like 331..543 CDD:239801
Reprolysin 332..545 CDD:279729
TSP1 683..741 CDD:214559 17/58 (29%)
Adamtsl3NP_001101003.2 TSP1 90..136 CDD:214559 18/64 (28%)
TSP1 438..>458 CDD:214559 5/22 (23%)
TSP1 498..>527 CDD:214559 7/29 (24%)
TSP1 583..>603 CDD:214559
TSP1 720..773 CDD:214559
TSP1 839..894 CDD:214559
Ig 942..1006 CDD:299845
Ig 1223..1291 CDD:143165
IG_like 1313..1392 CDD:214653
IGc2 1329..1387 CDD:197706
TSP_1 1502..1557 CDD:278517
PLAC 1673..1703 CDD:285849
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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