DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stl and Adamts17

DIOPT Version :9

Sequence 1:NP_001097423.1 Gene:stl / 37619 FlyBaseID:FBgn0086408 Length:1136 Species:Drosophila melanogaster
Sequence 2:XP_218753.6 Gene:Adamts17 / 293004 RGDID:1308783 Length:1122 Species:Rattus norvegicus


Alignment Length:1146 Identity:260/1146 - (22%)
Similarity:395/1146 - (34%) Gaps:358/1146 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 LDKNTLVGHLREHERALIFGSRSPEEAPEFKLVHLAQQRPEEQQRLEERKRPGEAEQHGGNPHQR 124
            ||..|:||                :.|.:.::|...:.||::   :..:..||.|     ...|.
  Rat    21 LDPGTVVG----------------DAAADVEVVLPRRLRPDD---VHLQLLPGAA-----GLRQW 61

  Fly   125 RQRRSLPSEDGNGPLPPEEEEQEAGEDVEARLQLQQSPQLIDDAFIFIRR-----------TENG 178
            |:.|:.|.:...||          ||    |..|...|....|.::.:||           .|.|
  Rat    62 RRPRASPGDPRAGP----------GE----RALLLHLPAFGRDLYLQLRRDLRFLSPGFEVEEAG 112

  Fly   179 TQFVEHSPQLLKRLERCFYRSPA-------AALDLC-EPGNVRGVFQQNGSDLVIHPLPARFGTG 235
            .......|     .|.|||....       .:|..| ..|.:.|:.|.....:.|.||       
  Rat   113 VSGRSGHP-----AELCFYSGQVLGHPGSLVSLSACGAAGGLVGLIQLEQELVFIQPL------- 165

  Fly   236 THVLYQARVDKSGGGYSEASSRRTASPLDSQLQFEPDAEEFNEPRRRLRAQSQLQSPLRLRFQPR 300
                     :.|||.:    |||.                 :..||:..:.|.|.:.:.   .||
  Rat   166 ---------NNSGGPF----SRRE-----------------HLIRRKWSSTSGLATKVE---GPR 197

  Fly   301 HHHPHQHHQQRRRRYIGDAPRSRWSDI--PEELFIETAIFVDSDLYAHMQKNFPTNTESKVVSFL 363
            .|......::.|:..:....|.|.:.|  ..|..:||.:..|:|:..:       :.......|:
  Rat   198 QHCKVVTEEKPRKGKLSWDWRERRNAIRLTNEHTVETLVVADADMVQY-------HGAEAAQRFI 255

  Fly   364 LAMINGVQLLYHHPTLGRRINFVLKRLEIWKSWDPPGLVRSRDVENYLNSFCKWQEK-------- 420
            |.::|.|..::.|.:||.:||..:.:|.:.:. .|..|......|..|.|||.||.:        
  Rat   256 LTVMNMVYNMFQHQSLGIKINIQVTKLVLLRQ-RPAKLSIGHHGERSLESFCHWQNEEYGGARYL 319

  Fly   421 ---LNPFSDADPLHYDHALVLTGLDLVTYDKGKANSQVVGMATVKGMCTSIYSCTINEAKHFESV 482
               ..|....|....|.|:.:|..|...:.....::  ||:|.:.|:|::...|.:.|.......
  Rat   320 GNNQVPGGKDDTPPVDAAVFVTRTDFCVHKDEPCDT--VGIAYLGGVCSAKRKCVLAEDNGLNLA 382

  Fly   483 FVVAHEIGHNLGMRHDAKEISCDPTMHIMSPKLGSGK----VTWSKCSRTYLEDFLMDPQAECLF 543
            |.:|||:||||||.||....||....||||.:...|:    ::||.|||..||:||....:.||.
  Rat   383 FTIAHELGHNLGMNHDDDHSSCAGRSHIMSGEWVKGRNPSDLSWSSCSRDDLENFLKSKVSTCLL 447

  Fly   544 ---DRDSFAGPWDHTAGGRLPGERFNANQQCMLRFGKNFMQASTQSKME--ICRDLHCRQDGLPW 603
               .|...|....|    :|||..::||:||.:.||.|   |:....||  :|..|.|..:|  .
  Rat   448 ITDPRSQHALRLPH----KLPGMHYSANEQCQILFGTN---ATFCKNMEHLMCAGLWCLVEG--D 503

  Fly   604 TS-----HPALEGTECGPNMWCRGGTCEARSSKQGSYSALKSWP-PEHIPEATHEKIIRHEPNRI 662
            ||     .|.|:|||||.:.|||.|.|.:::            | |||:                
  Rat   504 TSCKTKLDPPLDGTECGADKWCRAGECVSKT------------PIPEHV---------------- 540

  Fly   663 PPLLHDYNPMDNELPGSPSNWGEWSEPSACESGCLYGQSRRLLEGSTGLRTLNRSCLNFP----- 722
                             ..:|..||..|.|...|           .||.|...|.|.|.|     
  Rat   541 -----------------DGDWSPWSAWSMCSRTC-----------GTGARFRQRKCDNPPPGPGG 577

  Fly   723 SRCIGRDRRFVTCNTPQCHK-VPVQTINDFATQVCMQARKSDPELTGEGQQLPSTL---DASCKI 783
            :.|.|.......|....|.| ||     .|..|.|    ::...|:.:.:.|.:.:   |..|::
  Rat   578 THCQGASVEHAACENLPCPKGVP-----SFRDQQC----QAHDRLSSKKRGLLTAMVVDDKPCEL 633

  Fly   784 FCRTRTNGTKSRRWTFP--------DGTTCKAKQHNPEDITYCISGRCERFSCDNSTSNFFKMD- 839
            :|...  |.:|     |        |||.|     .|.:...|:.|||::..||....:..|.| 
  Rat   634 YCSPL--GKES-----PLLVADRVLDGTPC-----GPYETDLCVYGRCQKIGCDGIIGSAAKEDR 686

  Fly   840 -----------------------SSFCE-------ARSVRPTRD-------SSDQESRQQTNRQ- 866
                                   :.:.|       ||.:|...|       :....|::..|.. 
  Rat   687 CGVCSGDGKTCRVVKGDFSHSRGTGYIEAVVIPAGARRIRVVEDKPAHSFLALKDSSKRSINSDW 751

  Fly   867 ---------------RYAERQEGKPQKNHYENEVAKRPSYGQGNHINAPASPYKRRNYHKPYPPE 916
                           ||..|       ..:|...||.|:...   ::.....:..:||...|...
  Rat   752 KIELPGEFQIAGTIVRYVRR-------GLWEKFSAKGPTTVP---LHLMVLLFHDQNYGIHYEYT 806

  Fly   917 IPRPPPPASASLIALDRSSSSESE----------WVAHPGCHSNCMTDSKGVQGVTSRLTGVESI 971
            ||            :::|:.::||          |.     ||       |.:|.:.:..|.|..
  Rat   807 IP------------VNQSTENQSEPAKPQDALFLWT-----HS-------GWEGCSVQCGGGERR 847

  Fly   972 QLCSYRIQPCERL--QTAAEYAEQTC---ARYRQKVRGLSGHGAQ---ISASIDEPDRSCRVGCQ 1028
            .:.|     |.|:  :|.....:..|   :|...:||..:.|..|   ::........:|..|.|
  Rat   848 TIVS-----CTRIVNKTTTLVNDSDCPQASRPEPQVRRCNSHPCQSRWVAGQWSPCSATCEKGIQ 907

  Fly  1029 DEFIKYRYYLVNGRNGHFPPGTRCS---PVGKRYCVYGRCL 1066
            ...:...|.|.||.:....| ..||   |...:.|....||
  Rat   908 HREVTCVYQLQNGTHVTTRP-IYCSEPRPTPVQSCEGQDCL 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stlNP_001097423.1 Pep_M12B_propep <155..239 CDD:279848 21/102 (21%)
ZnMc_ADAMTS_like 331..543 CDD:239801 65/226 (29%)
Reprolysin 332..545 CDD:279729 66/230 (29%)
TSP1 683..741 CDD:214559 16/62 (26%)
Adamts17XP_218753.6 Pep_M12B_propep 61..179 CDD:279848 34/173 (20%)
AANH_like 168..>244 CDD:294206 22/99 (22%)
Reprolysin 230..447 CDD:279729 65/226 (29%)
ZnMc_ADAMTS_like 230..447 CDD:239801 65/226 (29%)
TSP1 544..596 CDD:214559 16/62 (26%)
ADAM_spacer1 698..808 CDD:283607 17/119 (14%)
TSP_1 893..946 CDD:278517 12/53 (23%)
TSP1 950..>981 CDD:214559
TSP1 1001..1053 CDD:214559
PLAC 1080..1106 CDD:285849
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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