DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stl and mig-17

DIOPT Version :9

Sequence 1:NP_001097423.1 Gene:stl / 37619 FlyBaseID:FBgn0086408 Length:1136 Species:Drosophila melanogaster
Sequence 2:NP_505901.2 Gene:mig-17 / 179575 WormBaseID:WBGene00003248 Length:509 Species:Caenorhabditis elegans


Alignment Length:536 Identity:117/536 - (21%)
Similarity:196/536 - (36%) Gaps:149/536 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 ARLQLQQSPQLIDDAFIFIRRTENGTQF---VEHSPQLLKRLERCFYRSPAAALDLCEPGNVRGV 215
            ||.:.|||    :|.....|:.::|.:|   ::::.:.::.::..|..:....|.|         
 Worm    21 ARREKQQS----NDISFVKRKVQDGLKFSRVIKYTNETIQGMKTNFNSNKTQELSL--------- 72

  Fly   216 FQQNGSDLVIHPLPARFGTGTHVLYQARVDKSGGGYSEASSRRTASPLDSQLQ--FEP-----DA 273
                  |:::        ....:.|||.::.|.|     .|.|....|...|.  ||.     |.
 Worm    73 ------DVLV--------VADFLSYQAFLEMSNG-----DSHRAIHNLKEYLHALFEQTKIIYDG 118

  Fly   274 EEF-NEPRRRLRAQSQLQSPLRLRFQPRHHHPHQHHQQRRRRYIGDAPR-SRWSDIPEELFIETA 336
            ..| ||....:.|.:.:.:                 |:|      |.|. ..|::..||..:...
 Worm   119 ISFGNETLHMVFAGTWIAT-----------------QER------DCPLWISWAEEEEERVLNEE 160

  Fly   337 I-------------FVDSDLYAHMQKNFPTNTESKVVSFLLAMINGVQLLYHHPTLGRRINFVLK 388
            |             |||...:.:...:..::|::.:.|.:             |...|:  ||..
 Worm   161 IRRLEEKERDLNSTFVDDTFFMNSTDSDNSSTDALISSDM-------------PKKLRK--FVDI 210

  Fly   389 RLEIWKSWDPPGLVRSRDVENYLNSFCKWQEKLNPFSDADPLHYDHALVLTGLDLVTYDKGKANS 453
            .||..:..:...:....|.:..::.|..|.::....    |.| :||:::|..||::.:   .||
 Worm   211 TLEEMQENNSTEMTLKIDSKKAIDKFTIWLKEQTGL----PRH-EHAVLITKFDLISIN---GNS 267

  Fly   454 QVVGMATVKGMCTSIYSCTINEAKHFESV------FVVAHEIGHNLGMRHDA--KEISCDPTMHI 510
            ...|||.|..:|.:..|.::     .|.:      .::||||||:||..||.  :...||...:.
 Worm   268 ATQGMAYVGNICENGDSSSV-----VEDIGAGLTSLIMAHEIGHSLGALHDGAYETAECDSNDNY 327

  Fly   511 MSPKLGSGKV---------TWSKCSRTYLEDFLMDPQAECLFDRDSFAGPWDHTAGG-------- 558
            :.....||..         ..|.||...:.:.|.:|.|.|:       ..|....|.        
 Worm   328 LMAVAVSGSADRQSFLNSRRMSNCSINSIIENLKEPTANCV-------KKWKTKKGKDVSQKDFI 385

  Fly   559 RLPGERFNANQQCMLRFGKNF---MQASTQSKMEICRDLHCRQDG-----LPWTSHPALEGTECG 615
            :.|||.....:||.:.||..|   :......:..||..:.| .||     ......||.:|||||
 Worm   386 KKPGELVKITRQCQVAFGPTFIPCLHIGYFHEQSICERIWC-SDGESDECQTLNYFPAFDGTECG 449

  Fly   616 PNMWCRGGTCEARSSK 631
            .||||..|:|...:.|
 Worm   450 YNMWCLEGSCVQNTKK 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stlNP_001097423.1 Pep_M12B_propep <155..239 CDD:279848 12/86 (14%)
ZnMc_ADAMTS_like 331..543 CDD:239801 52/241 (22%)
Reprolysin 332..545 CDD:279729 52/242 (21%)
TSP1 683..741 CDD:214559
mig-17NP_505901.2 ZnMc_ADAM_like 162..361 CDD:239795 47/226 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6268
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

Return to query results.
Submit another query.