DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stl and Adgrb1

DIOPT Version :9

Sequence 1:NP_001097423.1 Gene:stl / 37619 FlyBaseID:FBgn0086408 Length:1136 Species:Drosophila melanogaster
Sequence 2:XP_006520332.1 Gene:Adgrb1 / 107831 MGIID:1933736 Length:1620 Species:Mus musculus


Alignment Length:408 Identity:84/408 - (20%)
Similarity:120/408 - (29%) Gaps:140/408 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   602 PWTSHPALE--------GTECGPNMW---------------CRGGTCEARSSKQGS----YSALK 639
            |.|..||.|        .:.||.. |               |.|...|.|.....:    :.|..
Mouse   350 PQTGDPAAEEWSPWSVCSSTCGEG-WQTRTRFCVSSSYSTQCSGPLREQRLCNNSAVCPVHGAWD 413

  Fly   640 SWPPEHIPEATHEKIIRHEPNRIPPLLHDYNPMDNE-----------LPGS--PSNWGEWSEPSA 691
            .|.|..:..:|..:..|.......|.....||.:..           .||.  ..||.|||..|.
Mouse   414 EWSPWSLCSSTCGRGFRDRTRTCRPPQFGGNPCEGPEKQTKFCNIALCPGRAVDGNWNEWSSWST 478

  Fly   692 CESGCLYGQSRRLLEGSTGLRTLNRSCLNFPS----RCIGRDRRFVTCNTPQCHKVPVQTINDFA 752
            |.:.|..|:.:|           .|.| |.||    .|.|.......|...||   ||.      
Mouse   479 CSASCSQGRQQR-----------TREC-NGPSYGGAECQGHWVETRDCFLQQC---PVD------ 522

  Fly   753 TQVCMQARKSDPELTGEGQQLPSTLDASCKIFCRTRTNGTKSRR-----WTFPDGTTCKAKQHNP 812
                           |:.|...|.  .||.:.|    .|...||     ..|..|..|:..|   
Mouse   523 ---------------GKWQAWASW--GSCSVTC----GGGSQRRERVCSGPFFGGAACQGPQ--- 563

  Fly   813 EDITYCISGRC--ERFSCDNSTSNFFKM---DSSFCEARSVRPTRD------------------- 853
            ::...|.:.||  ....||.  .||..:   ::...|..:||..|:                   
Mouse   564 DEYRQCGAQRCPEPHEICDE--DNFGAVVWKETPAGEVAAVRCPRNATGLILRRCELDEEGIAFW 626

  Fly   854 ---------SSDQESRQQTNRQRYAERQEGKPQKNHYE-----NEVAKRPSYGQGNHINA----- 899
                     |.|..:.|...|:..|:.|.|.|.:...|     .|:::..:...|:.::.     
Mouse   627 EPPTYIRCVSIDYRNIQMMTREHLAKAQRGLPGEGVSEVIQTLLEISQDGTSYSGDLLSTIDVLR 691

  Fly   900 PASPYKRRNYHKPYPPEI 917
            ..:...||.|:.|.|.::
Mouse   692 NMTEIFRRAYYSPTPGDV 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stlNP_001097423.1 Pep_M12B_propep <155..239 CDD:279848
ZnMc_ADAMTS_like 331..543 CDD:239801
Reprolysin 332..545 CDD:279729
TSP1 683..741 CDD:214559 18/61 (30%)
Adgrb1XP_006520332.1 TSP1 264..314 CDD:214559
TSP1 359..407 CDD:214559 7/48 (15%)
TSP1 412..462 CDD:214559 7/49 (14%)
TSP1 470..520 CDD:214559 19/64 (30%)
TSP1 525..575 CDD:214559 14/58 (24%)
HormR 577..643 CDD:214468 10/67 (15%)
GAIN 661..859 CDD:374574 8/49 (16%)
GPS 880..938 CDD:197639
7tmB2_BAI_Adhesion_VII 945..1234 CDD:320379
TM helix 1 947..971 CDD:320379
TM helix 2 981..1002 CDD:320379
TM helix 3 1012..1034 CDD:320379
TM helix 4 1052..1068 CDD:320379
TM helix 5 1088..1111 CDD:320379
TM helix 6 1166..1191 CDD:320379
TM helix 7 1196..1221 CDD:320379
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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