DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycB and ccnb3

DIOPT Version :9

Sequence 1:NP_726244.1 Gene:CycB / 37618 FlyBaseID:FBgn0000405 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_001070187.1 Gene:ccnb3 / 767751 ZFINID:ZDB-GENE-060929-684 Length:398 Species:Danio rerio


Alignment Length:417 Identity:127/417 - (30%)
Similarity:198/417 - (47%) Gaps:59/417 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 RNRVPTKTTVEPTKVTVKSSSSENVNEPTLKREDSNLSKKSLTKLRAA-----------LAKPVM 170
            :.:.||.:.:.    .:.|...||.:.|..||..|  |.:...|.|.|           |..|:.
Zfish     5 KGKKPTTSKIP----KLNSKKLENQDGPQTKRSSS--SPQGAPKKRTAFVDITNAHKIELCNPIK 63

  Fly   171 GVSGIRREPV-------AVSRKEAETKKEL-PETKKDSLE-VKKDATRMPLIRGNSAVTTTTSTM 226
                 :::|.       .:|:.:...|..: ||.|.:.|: |:.|            :..|:...
Zfish    64 -----KKDPAKKLQKTSVLSKNDVNLKSIVSPEEKLEELKNVESD------------IEETSCKD 111

  Fly   227 PTTMSLSSKRLAGIEDIDANDKENLVLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRA 291
            |....|....:....|||:....:....|||..:|:|||...| |:.:..|::..|..::..|||
Zfish   112 PIPPHLLPPEIPPEFDIDSEHLSDSSHTSEYAKEIFDYLKNRE-EKFVLCDYMVDQPNLNTNMRA 175

  Fly   292 VLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATKYEELFPPAIG 356
            :|:||:.||...|.|..||..|||.:.|.|| .|..|||..|||:|.||:.||:|:||..||.:.
Zfish   176 ILVDWLVEVQENFELNHETLYLAVKVTDHYL-AVSQTKREALQLIGSTAMLIASKFEERAPPCVD 239

  Fly   357 DFVFITDDTYTARQIRQMELQIFKAIDCNLSRPLPIHFLRRYSKAAGAEDEHHTMSKYFIELASV 421
            ||::|.||.|...|:..||:.|.:|::.:.:.|:|..|||||:|...|..:..|::::..||:.:
Zfish   240 DFLYICDDAYKRSQLISMEISILQALNFDTNIPVPYRFLRRYAKCVNAGMDTLTLARFICELSLL 304

  Fly   422 DYEMATYRPSEIAAASLFLSLHL--LNGNHRAGTGFNDRHWTPTLTFYSRYSAAHLRPITRLIAK 484
            :.|....|.|.:|:|.|.::|..  |.|            ||..|.|:|.|||..|.|:.|.:..
Zfish   305 EMEFVPVRASLLASACLLIALVTKDLGG------------WTQCLQFHSGYSAEDLAPVVRKLHH 357

  Fly   485 LARDAPQAKLKAIYNKYQGSKFQKIAL 511
            :......:||..|.:||....|.::||
Zfish   358 MLSSPADSKLAVIRSKYAHKVFFEVAL 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycBNP_726244.1 Cyclin_N 260..387 CDD:278560 54/126 (43%)
Cyclin_C 389..515 CDD:281044 40/125 (32%)
ccnb3NP_001070187.1 Cyclin_N 145..270 CDD:278560 54/126 (43%)
Cyclin_C 272..386 CDD:281044 40/125 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D475911at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R194
SonicParanoid 1 1.000 - - X94
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.850

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