DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CycB and Ccnb3

DIOPT Version :9

Sequence 1:NP_726244.1 Gene:CycB / 37618 FlyBaseID:FBgn0000405 Length:530 Species:Drosophila melanogaster
Sequence 2:XP_038956227.1 Gene:Ccnb3 / 317389 RGDID:1564367 Length:1405 Species:Rattus norvegicus


Alignment Length:658 Identity:152/658 - (23%)
Similarity:268/658 - (40%) Gaps:181/658 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LKMRGDENASENFK-QVQLKKLTVPSMEATTKRA--ALGDLQNRGISRPIAAKDA--AQKDSKDL 65
            ||...:||.|.:.: .:..:...:.:...|||.|  ||..|:         |.||  |.:.|:.|
  Rat   756 LKKVLNENTSSDVEGPLSHQSPHIQNHSGTTKEALEALDALE---------ALDALEALEASETL 811

  Fly    66 KLTDALRNAKARVDSHWKKQPLG---STNGNGNGAVPPKV---NEGGVSAFLRSNSVRNRVPTK- 123
            :..:||..:.|      .::||.   ..:.....|:...:   :|....||:||.:.....|.: 
  Rat   812 EALEALEASGA------LEEPLNIQEELSSEDIVAIMKSLITEDESIKEAFIRSYTTATEAPAEK 870

  Fly   124 -TTVEPTKV----TVKS--SSSEN---------------VNEPTLKR------EDSNLSKKSLTK 160
             .::|.|.:    |:|.  ||.|.               |..|.|:|      |:...:.::|.:
  Rat   871 SLSLEETSINEVATLKEPLSSQEKHRAELVTVLKELLVLVKNPRLERLALAFQENPPSNVETLLR 935

  Fly   161 LRAALAKPVMGVSGIRREPVAVSRKEAETKKEL----------------------------PETK 197
            ...||.:...|......||:|:..| ..||.||                            |:.:
  Rat   936 EVLALVEKSTGEESTLNEPLALQEK-LSTKAELSPKELLALEDNPSFKKASPQGSLTFDHKPDIE 999

  Fly   198 KDSL------------------------------------------------------------- 201
            ||.:                                                             
  Rat  1000 KDEITRMSFSFEEFSIDSLYEKVLALSEGFTTTEQLSFTDLQNFDESKIVDEEDIFKSFFVFENE 1064

  Fly   202 ----------EVKKDATRMPL---------IRGNSAVTTTTSTMPTTMSLSSKRLAGIEDIDAND 247
                      |.:||.:..|:         :.....|:.|.|:..:.....::::..::|.|..:
  Rat  1065 NNPNLSSNGFESRKDNSSAPMPSLEAFNSVMNSEPCVSATKSSQSSLGGKETEQVIILDDSDTQE 1129

  Fly   248 ---KE--NLVLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLA 307
               ||  :|:|.|.|..:|:.||.:.| |:.|...::..|.|::..|||:|:||:.||...|.::
  Rat  1130 SFVKEDSDLLLSSTYAKNIFIYLKERE-EKFIVTKYMDEQMELTSDMRAILVDWMVEVQANFRMS 1193

  Fly   308 AETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIR 372
            .||..|||.::||||...: .::.:|||:|.||..||.|:||.:||::.:|::|.:|.|...::.
  Rat  1194 HETLYLAVKLMDRYLMKAQ-CEKNHLQLLGSTAYMIAAKFEESYPPSLTEFLYICEDLYPKSEMV 1257

  Fly   373 QMELQIFKAIDCNLSRPLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAAS 437
            .:|..|.|.::.:::.|:..||||||:....|..:..|:|::..|:...:|:....|||::||||
  Rat  1258 SLERNILKTLNFDINIPIAYHFLRRYASCIHASMKTLTLSRFICEMTLQEYDYIDERPSKLAAAS 1322

  Fly   438 LFLSLHLLNGNHRAGTGFNDRHWTPTLTFYSRYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQ 502
            ..|:|::.          |.:...|:|.:.:.|..|.|..:.|.:..|.....:..||.::.||.
  Rat  1323 FILALYMR----------NLKDCVPSLEYSTGYQLAELHILVRKLNHLLNFRSRTVLKNVFEKYS 1377

  Fly   503 GSKFQKIA 510
            ...:.::|
  Rat  1378 EETYFEVA 1385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycBNP_726244.1 Cyclin_N 260..387 CDD:278560 46/126 (37%)
Cyclin_C 389..515 CDD:281044 34/122 (28%)
Ccnb3XP_038956227.1 CYCLIN_SF 1133..1270 CDD:424085 52/138 (38%)
CYCLIN_SF 1274..1388 CDD:424085 34/122 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D993640at2759
OrthoFinder 1 1.000 - - FOG0000121
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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