DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycB and Ccni

DIOPT Version :9

Sequence 1:NP_726244.1 Gene:CycB / 37618 FlyBaseID:FBgn0000405 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_001099468.1 Gene:Ccni / 289500 RGDID:1309209 Length:377 Species:Rattus norvegicus


Alignment Length:126 Identity:35/126 - (27%)
Similarity:63/126 - (50%) Gaps:11/126 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 KEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATK- 346
            :.||...|..:|.|:.::..||:|..|||.||.:::||:|..||...: ||..:.::..|:|.| 
  Rat    38 QNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPK-YLNCIAISCFFLAAKT 101

  Fly   347 --YEELFPPAIGDFVFITDDTY---TARQIRQMELQIFKAIDCNLSRPLPIHFLRRYSKAA 402
              .:|..|.    ...:..|::   ::.:|.:||..|...::.:|....|:.||..:...|
  Rat   102 VEEDEKIPV----LKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIA 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycBNP_726244.1 Cyclin_N 260..387 CDD:278560 30/109 (28%)
Cyclin_C 389..515 CDD:281044 4/14 (29%)
CcniNP_001099468.1 Cyclin_N 38..142 CDD:278560 30/108 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339995
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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