DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42260 and CNGC4

DIOPT Version :9

Sequence 1:NP_001356969.1 Gene:CG42260 / 37614 FlyBaseID:FBgn0259145 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_001332114.1 Gene:CNGC4 / 835513 AraportID:AT5G54250 Length:694 Species:Arabidopsis thaliana


Alignment Length:514 Identity:97/514 - (18%)
Similarity:182/514 - (35%) Gaps:155/514 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   572 VFDPAGRLCYYWSMV----------VSMAFLYNF-------------WVIIYRFAFQEINRRTIA 613
            :.||..:....|:.|          |...|||..             |:.:           |:.
plant    79 ILDPRSKWVREWNKVFLLVCATGLFVDPLFLYTLSVSDTCMCLLVDGWLAL-----------TVT 132

  Fly   614 IWFCLDYLSDFLYLIDILFHFR------------TGYLEDGVLQTDALKLRTHYMNSTIFYIDCL 666
               .|..::|.|:|.:|...|:            .|....|.....:.::...|:....|:.|..
plant   133 ---ALRSMTDLLHLWNIWIQFKIARRWPYPGGDSDGDTNKGGGTRGSTRVAPPYVKKNGFFFDLF 194

  Fly   667 CLLPLDFLYLSIGFNSILR--SFRLV--------------KIYRFWAFMDRTERHTNYPNLFRST 715
            .:|||..:.|.:...|:|:  |..||              |||       .:.||     |.|:.
plant   195 VILPLPQVVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIY-------HSIRH-----LRRNA 247

  Fly   716 ALIHYLLVIFHW----------------NGCLYHI------------------------------ 734
            .|..|:.....|                ..|.|.:                              
plant   248 TLSGYIFGTVWWGIALNMIAYFVAAHAAGACWYLLGVQRSAKCLKEQCENTIGCDLRMLSCKEPV 312

  Fly   735 ----------------------------IHKNNGFGSRNWVYHDSESADVVKQYLQSYYWCTLAL 771
                                        |:.|..:|:..|......|...:::.|...:|..:.|
plant   313 YYGTTVMVLDRARLAWAQNHQARSVCLDINTNYTYGAYQWTIQLVSSESRLEKILFPIFWGLMTL 377

  Fly   772 TTIGDLPKPRSKGEYVFVILQLLFGLMLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRR 836
            :|.|:|.......|.||.|:.|..||:|...::|::...:.:.::.::....|:..::.:|:.|.
plant   378 STFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRH 442

  Fly   837 VPNHLQVKVIKWFDYLWLTQKCSDEERAVSCLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCE 901
            :|...:.:|..:....|...:..||...|..||:.|:.:|..::.||.:::|.:||:.:...|..
plant   443 LPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLEN 507

  Fly   902 LVLRLRPVLFSPGDYICRKGEVGKEMYIVNRGRL---QVVADNGKTVMASLKAGSYFGE 957
            :..|::.::|:.|:.|.::|:..:.|..|.||.|   |::.|..|: ...|..|::.|:
plant   508 ICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKS-CCMLGPGNFSGD 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42260NP_001356969.1 Ion_trans 581..819 CDD:334124 60/362 (17%)
CAP_ED 890..1004 CDD:237999 19/71 (27%)
DUF4655 1084..>1154 CDD:317882
CNGC4NP_001332114.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1073751at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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