DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42260 and CNGC1

DIOPT Version :9

Sequence 1:NP_001356969.1 Gene:CG42260 / 37614 FlyBaseID:FBgn0259145 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_200125.1 Gene:CNGC1 / 835393 AraportID:AT5G53130 Length:716 Species:Arabidopsis thaliana


Alignment Length:596 Identity:138/596 - (23%)
Similarity:242/596 - (40%) Gaps:135/596 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   570 HFVFDPAGRLCYYWSMV--------VSMAFLYNFWVIIYRFAFQ--EINRRTIAIWFCLDYLSDF 624
            |.:.||.|.....|:.:        ||:..|: |:|.|...|.:  .|:::.......|...:|.
plant    82 HKILDPQGPFLQRWNKIFVLACIIAVSLDPLF-FYVPIIDDAKKCLGIDKKMEITASVLRSFTDV 145

  Fly   625 LYLIDILFHFRTGYLED-------GVLQTDALKLRTHYMNSTIFYIDCLCLLPLDFLYL------ 676
            .|::.|:|.||||::..       |||..|..::...|::|. |.||.|.:|||..:.:      
plant   146 FYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSH-FIIDILAVLPLPQMVILIIIPH 209

  Fly   677 -----SIGFNSILRSF-------RLVKIYRFWAFMDRTE---RHTNYP----NLFRSTALIH--- 719
                 |:...::|:..       |.::||..:..:.||.   ..|.:.    |||......|   
plant   210 MRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFG 274

  Fly   720 ---YLLVIFHWNGCLYHIIHKNN-----------------------------------GFGSRNW 746
               ||..|.....|......:||                                   .||    
plant   275 AFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNTTLFDFG---- 335

  Fly   747 VYHDS------ESADVVKQYLQSYYWCTLALTTIG-DLPKPRSKGEYVFVILQLLFGLMLFATVL 804
            ::.|:      ||.|..:::...::|....|:::| :|.......|..|.:...:.||:||:.::
plant   336 IFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLI 400

  Fly   805 GHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNHLQVKVIKWFDYLWLTQKCSDEERAVSCLP 869
            |::...:.|.:...:|.:.|....:.:|..|.:|.:|:.::.::..|.|...:..|||..:|.||
plant   401 GNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLP 465

  Fly   870 DKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGEVGKEMYIVNRGR 934
            ..|:.:|..::.|..|.||.:|:..:...|..|..||:|||::...||.|:|:...||..:.||:
plant   466 KDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGK 530

  Fly   935 LQVVADN-GKTVMAS---LKAGSYFGEISI---LNMGTAGNR--RTASVRSVGYSDLFVLSKKDM 990
            |..:..| |:|...:   |.||.:.||..:   |:..::.|.  .|.:||::...:.|.|...|:
plant   531 LLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDL 595

  Fly   991 WDVLKEYPAARVRLESIAVKRLEKY---------------------KKAPLEKVK-----YFNVV 1029
            ..|..::.    ||.|..::...:|                     ||...|.:|     ..:.:
plant   596 KFVASQFR----RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRLQDAL 656

  Fly  1030 AMGRCQSTPGL 1040
            |...|.|:|.|
plant   657 AKEACGSSPSL 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42260NP_001356969.1 Ion_trans 581..819 CDD:334124 67/327 (20%)
CAP_ED 890..1004 CDD:237999 34/122 (28%)
DUF4655 1084..>1154 CDD:317882
CNGC1NP_200125.1 PLN03192 78..>557 CDD:215625 114/480 (24%)
CAP_ED 486..617 CDD:237999 37/134 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 53 1.000 Domainoid score I4197
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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