DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42260 and LOC562466

DIOPT Version :9

Sequence 1:NP_001356969.1 Gene:CG42260 / 37614 FlyBaseID:FBgn0259145 Length:1269 Species:Drosophila melanogaster
Sequence 2:XP_009295831.2 Gene:LOC562466 / 562466 -ID:- Length:801 Species:Danio rerio


Alignment Length:551 Identity:172/551 - (31%)
Similarity:290/551 - (52%) Gaps:45/551 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 GQPHHQKPRRTASQRIRAATAARKLHFV--------------------FDP-AGRLCYYWSMVVS 588
            |:|..:|..:|..::    :...|::|.                    .|| ..|....|..:|:
Zfish   263 GKPVEKKDDKTDEKK----SIFSKVNFTCVDFVLKPFEMRMDNRIGKSIDPFTDRRYITWLSMVT 323

  Fly   589 MAFLYNFWVIIYRFAFQEINRRTIAIWFCLDYLSDFLYLID-ILFHFRTGYLEDGVLQTDALKLR 652
            :||.||.|.:..|.||...:...:.:||.||.::||:|:.| |.|..|..:.:.|.:..|...::
Zfish   324 IAFNYNLWFVPVRMAFPYHSPEVVPLWFTLDIIADFIYIFDMIFFQPRLQFSKGGDIIYDREVIK 388

  Fly   653 THYMNSTIFYIDCLCLLPLDFLYLSIGFNSILRSFRLVKIYRFWAFMDRTERHTNYPNLFRSTAL 717
            ..|..|..|..|.:.:||:|.||:..||||:.|..||:|:..|:.|.||.|.......::|....
Zfish   389 KKYRESGRFQNDVIAVLPIDLLYIPFGFNSVFRLNRLMKVESFFEFSDRLEGLLTRAYIWRVIRT 453

  Fly   718 IHYLLVIFHWNGCLYHIIHKNNGFGSRNWVYHDSESADVVKQYLQSYYWCTLALTTIGDLPKPRS 782
            |.|||.|.|.|.|||::...:.|.||..|||....||     ||..:::...:|..|.:||.|.:
Zfish   454 IGYLLFILHLNACLYYVASVSQGIGSTKWVYSGKGSA-----YLSCFFYAEKSLLMIAELPFPET 513

  Fly   783 KGEYVFVILQLLFGLMLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNHLQVKVIK 847
            ....:|.:.....|.:..:.:|..:.:::.:.:|.:..|:|.:|....||....:|..:|.:|..
Zfish   514 MFGQIFQMTNYFVGALFLSIILAQMRDVIGAATAGQTYFRASMDACVAYMVTNHIPKMVQSRVRT 578

  Fly   848 WFDYLWLTQKCSDEERAVSCLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFS 912
            |::|.|.:|...||...:..:|..::..||::::|.|.:::|:|:..:...|.:::|||:.:::.
Zfish   579 WYNYTWDSQGMLDESELLGQMPLVMRTAIAVDINLATFQKIELFKGCDNQMLVDMLLRLKSIVYL 643

  Fly   913 PGDYICRKGEVGKEMYIVNRGRLQVVA--DNGKTVMASLKAGSYFGEISIL-NMGTAGNRRTASV 974
            |||::.:||::||||||:..|.:||:.  || |.|..:||||..|||||:| :....||||||:|
Zfish   644 PGDFVVKKGDIGKEMYIIKAGEVQVIGGPDN-KIVFVTLKAGCVFGEISLLQSSANGGNRRTANV 707

  Fly   975 RSVGYSDLFVLSKKDMWDVLKEYPAARVRLESIAVKRLEKYK------KAPLEKVKYFNVVAMGR 1033
            .:.|:::||||.|||:.|:|..||.:: ::.:...::|.|.|      ||..||.|  .:...|:
Zfish   708 AAHGFANLFVLDKKDLNDILIHYPESQ-KVLARKGRKLLKAKGPPPAAKADEEKKK--GLALFGQ 769

  Fly  1034 CQSTPGLVES-CGRTSLEEMWLPPATAGASS 1063
            ...||.::.: .|.|..::.:|......||:
Zfish   770 KPPTPKMLRAFAGGTFTKKGFLDRLKNAASN 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42260NP_001356969.1 Ion_trans 581..819 CDD:334124 75/238 (32%)
CAP_ED 890..1004 CDD:237999 52/116 (45%)
DUF4655 1084..>1154 CDD:317882
LOC562466XP_009295831.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1073751at2759
OrthoFinder 1 1.000 - - FOG0000167
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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