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Protein Alignment CG42260 and Cngb3

DIOPT Version :9

Sequence 1:	NP_001356969.1	Gene:	CG42260 / 37614	FlyBaseID:	FBgn0259145	Length:	1269	Species:	Drosophila melanogaster
Sequence 2:	NP_038955.1	Gene:	Cngb3 / 30952	MGIID:	1353562	Length:	694	Species:	Mus musculus

Alignment Length:	461	Identity:	151/461 - (32%)
Similarity:	254/461 - (55%)	Gaps:	17/461 - (3%)

- Green bases have known domain annotations that are detailed below.

  Fly   549 HQ-----KPRRT-ASQRIRAATAARKLHFVFDPAGRLCYYWSMVVSMAFLYNFWVIIYRFAFQEI 607
            ||     ||:|. ..:.:|.....|.:....|   |:...|.::|::|:.:|.|::..|..|...
Mouse   176 HQDTFSFKPQRVPVKEHLRRMILPRSIDSYTD---RVYLLWLLLVTIAYNWNCWLLPVRLVFPCQ 237

  Fly   608 NRRTIAIWFCLDYLSDFLYLIDI-LFHFRTGYLEDGVLQTDALKLRTHYMNSTIFYIDCLCLLPL 671
            .......|...|.:.|.:||.|| |...|..::..|.:..|:.:|:.:|.:||.|.:|...|||.
Mouse   238 TPDNKNYWIITDIVCDIIYLCDILLIQPRLQFVRGGEIIVDSNELKRNYRSSTKFRMDVASLLPF 302

  Fly   672 DFLYLSIGFNSILRSFRLVKIYRFWAFMDRTERHTNYPNLFRSTALIHYLLVIFHWNGCLYHIIH 736
            :.||:..|.|.|.|:.|::|...|:.|....|...:...::|......|||.:.|.|.|:|:...
Mouse   303 EVLYIFFGVNPIFRANRILKYTSFFEFNHHLESIMDKAYVYRVIRTTGYLLFLLHINACVYYWAS 367

  Fly   737 KNNGFGSRNWVYHDSESADVVKQYLQSYYWCTLALTTIGDLPKPRSKGEYVFVILQLLFGLMLFA 801
            ...|.||..|||:...:     :||:.:||....|.|||.||:|::..|.||..|....|:.:|:
Mouse   368 DYEGIGSTKWVYNGEGN-----KYLRCFYWAVRTLITIGGLPEPQTSFEIVFQFLNFFSGVFVFS 427

  Fly   802 TVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNHLQVKVIKWFDYLWLTQKCSDEERAVS 866
            :::|.:.:::.:.:|.:..|||.:|.:..||....:|..:|.:|..|.:|.|.:|:..||...:.
Mouse   428 SLIGQMRDVIGAATANQNYFQACMDHIIAYMNKYSIPQSVQYRVRTWLEYTWNSQRILDESNLLE 492

  Fly   867 CLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGEVGKEMYIVN 931
            .||..::..||::::...:.:||:|:..:...:.:|:|||:..::.|||::|:|||:||||||:.
Mouse   493 NLPTAMQLSIALDINFSIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKKGEIGKEMYIIK 557

  Fly   932 RGRLQVV-ADNGKTVMASLKAGSYFGEISILNMGTAGNRRTASVRSVGYSDLFVLSKKDMWDVLK 995
            .|.:||: ..:|..|:.:|||||.|||||:|..| .||||||.|.:.|:::|..|.||.:.::|.
Mouse   558 HGEVQVLGGPDGAQVLVTLKAGSVFGEISLLAKG-GGNRRTADVVAHGFANLLTLDKKTLQEILL 621

  Fly   996 EYPAAR 1001
            .||.::
Mouse   622 HYPTSK 627

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.