DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42260 and che-6

DIOPT Version :9

Sequence 1:NP_001356969.1 Gene:CG42260 / 37614 FlyBaseID:FBgn0259145 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_001343628.1 Gene:che-6 / 182823 WormBaseID:WBGene00000487 Length:655 Species:Caenorhabditis elegans


Alignment Length:567 Identity:173/567 - (30%)
Similarity:276/567 - (48%) Gaps:87/567 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   567 RKLHFVFDPAGRLCYYWSMVVSMAFLYNFWVIIYRFAFQEINRRTIAIWFCLDYLSDFLYLIDIL 631
            |.|:|......:..|.||..||...:||.:.::. |.|.:|..:....|..|:.:.|.::::||.
 Worm    55 RLLYFYVPFNSKYYYIWSFFVSFGVMYNMFAMVI-FIFADIKTQYFWNWIFLNVMFDMVFIVDIF 118

  Fly   632 FHFRTGYLEDGVLQTDALKLRTHYMNSTIFYI-DCLCLLPLDFLYLSIGFNSILRSFRLVKIYRF 695
            ...|..||.:|....:..|||.:|....:... |..||||||||.......|::|:.|:||:.|.
 Worm   119 VQSRLTYLHEGEEVKNTKKLRKNYFFQKLKVANDIFCLLPLDFLLFFDDSMSLVRTIRIVKVIRL 183

  Fly   696 WAFMDRTERHTNYPNLFRSTALIHYLLVIFHWNGCLYHIIHKNNG--------FGSRNW------ 746
            ..|:.||::.|.:|..|:...|....:|:||||.|||.:.....|        ||...:      
 Worm   184 MDFVQRTQQQTTFPRAFKIILLAVSCIVLFHWNACLYFLFSLYEGITEESQTEFGFSYYKVFEPV 248

  Fly   747 -----VYHD-----------------------SESADVVK-------------QYLQSYYWCTLA 770
                 .|:|                       .|.|:..|             :|..|.||..|.
 Worm   249 FPTCQAYYDENCWFGEDIDHTLDLDDVRDSYKKEMAEYWKDKHYRWTTGNFSREYSMSIYWSALT 313

  Fly   771 LTTIGDLPKPRSKGEYVFVILQLLFGLMLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMR 835
            :||.|..|.|.:..:....:...|.|:::|||::|.|.::||.:|....||:..:||:|.||:.|
 Worm   314 ITTCGQQPWPSTSSQNSLEVFDTLIGVLVFATIIGSVGSVVTQMSQTVNEFRQMMDGIKFYMKYR 378

  Fly   836 RVPNHLQVKVIKWFDYLWLTQKCSDEERAVSCLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLC 900
            .|.:.:|.:.:..|.||....:..|||..:|.||.:|:|.||.|:|::||:.::||...|:.|:.
 Worm   379 EVNSAIQERALSCFMYLMAHNQLDDEEGILSLLPPRLQANIAANLHMETLQNIQIFALCESRFMH 443

  Fly   901 ELVLRLRPVLFSPGDYICRKGEVGKEMYIVNRGRLQVVADNGKTVMASLKAGSYFGEISILNM-- 963
            |:||.::..:|||.||:|||.|..||::||.:|:|:|:.|:....|..|..|:.|||:||:.:  
 Worm   444 EVVLLVKQQVFSPNDYLCRKNEKAKELFIVKKGKLRVIDDDTGEEMGELTEGATFGELSIVYVKG 508

  Fly   964 GTAGNRRTASVRSVGYSDLFVLSKKDMWDVLKEYPAARVRLESIAVKRLEKYKKAPLEKVKYFNV 1028
            ...|.||..|::|||:||::||.:.|:..:|:|:|              ::||          .:
 Worm   509 NLLGTRRCCSLQSVGFSDIYVLYRDDVSRLLQEFP--------------QEYK----------TI 549

  Fly  1029 VAMGR-CQSTPGLVESCGRTSLEEMWLPPATAGASSLMHHHQALQQQ 1074
            |...| ...:.||:|:   |.|.||..|.....|..|:....::.:|
 Worm   550 VMNARNLLHSRGLLET---TELGEMCDPSDHEEADDLVLEEMSVVEQ 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42260NP_001356969.1 Ion_trans 581..819 CDD:334124 81/293 (28%)
CAP_ED 890..1004 CDD:237999 47/115 (41%)
DUF4655 1084..>1154 CDD:317882
che-6NP_001343628.1 Ion_trans 68..>245 CDD:366146 56/177 (32%)
PLN03192 <303..>581 CDD:215625 106/304 (35%)
CAP_ED 433..544 CDD:237999 47/124 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0500
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3407
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1073751at2759
OrthoFinder 1 1.000 - - FOG0000167
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.770

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