DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42260 and tax-4

DIOPT Version :9

Sequence 1:NP_001356969.1 Gene:CG42260 / 37614 FlyBaseID:FBgn0259145 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_499033.1 Gene:tax-4 / 176297 WormBaseID:WBGene00006526 Length:733 Species:Caenorhabditis elegans


Alignment Length:738 Identity:260/738 - (35%)
Similarity:388/738 - (52%) Gaps:143/738 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 RSQQQGHHNAAQQAHHPYQLQHSASTVSHHPHAHGPPSQGGPGGPGPPHGGHPHHPHHGGAGSGG 536
            |.:.|.|...|||.....:...:.::.:..|.|               .||.|       |.|.|
 Worm    46 RRKNQVHTTTAQQNEFMQKYMPNGNSNAVQPAA---------------TGGQP-------ASSDG 88

  Fly   537 GSG---PGSHGGQPHHQKPRRTASQRIRAATAARKLHFVFDPAGRLCYYWSMVVSMAFLYNFWVI 598
            ||.   |          .|:.:.:.|||...|    ::..||:....|||:.||::|::||...:
 Worm    89 GSAIEVP----------PPKESYAVRIRKYLA----NYTQDPSTDNFYYWTCVVTVAYIYNLLFV 139

  Fly   599 IYRFAFQEI------------------------------NRRTI------------------AIW 615
            |.|..|.::                              |.:.:                  .:|
 Worm   140 IARQVFNDLIGPSSQSLCRFYNGTLNSTTQVECTYNMLTNMKEMPTYSQYPDLGWSKYWHFRMLW 204

  Fly   616 FCLDYLSDFLYLIDILFHFRTGYLEDGVLQTDALKLRTHYMNSTIFYIDCLCLLPLDFL------ 674
            ...|.|.|.:||||...::|.||::.|::..:|.|:...|..|..:.||.:.|:|||::      
 Worm   205 VFFDLLMDCVYLIDTFLNYRMGYMDQGLVVREAEKVTKAYWQSKQYRIDGISLIPLDYILGWPIP 269

  Fly   675 YLSIGFNSILRSFRLVKIYRFWAFMDRTERHTNYPNLFRSTALIHYLLVIFHWNGCLYHIIHKNN 739
            |::.....|||..||::..|....::|||..::.||.||...::.|:::|.|||.|||..|.:..
 Worm   270 YINWRGLPILRLNRLIRYKRVRNCLERTETRSSMPNAFRVVVVVWYIVIIIHWNACLYFWISEWI 334

  Fly   740 GFGSRNWVY-H-------DSESADVVKQYLQSYYWCTLALTTIGDLPKPRSKGEYVFVILQLLFG 796
            |.|:..||| |       |..:..::::|:.|:||.||.|||||::|.|....||.||.|.|:.|
 Worm   335 GLGTDAWVYGHLNKQSLPDDITDTLLRRYVYSFYWSTLILTTIGEVPSPVRNIEYAFVTLDLMCG 399

  Fly   797 LMLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNHLQVKVIKWFDYLWLTQKCSDE 861
            :::|||::|:|.::::::||||.|||.|:||:|.||.:|:|...|:::|||||||||..::...:
 Worm   400 VLIFATIVGNVGSMISNMSAARTEFQNKMDGIKQYMELRKVSKQLEIRVIKWFDYLWTNKQSLSD 464

  Fly   862 ERAVSCLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGEVGKE 926
            ::.:..|||||:||||:.||.:||::|.|||:.|||.|.||||:|:..:|||||:||:||::|:|
 Worm   465 QQVLKVLPDKLQAEIAMQVHFETLRKVRIFQDCEAGLLAELVLKLQLQVFSPGDFICKKGDIGRE 529

  Fly   927 MYIVNRGRLQVVADNGKTVMASLKAGSYFGEISILNMGTA--GNRRTASVRSVGYSDLFVLSKKD 989
            ||||.|||||||.|:||.|..:|:.||.|||:||||:..:  ||||||:||||||:|||||||.|
 Worm   530 MYIVKRGRLQVVDDDGKKVFVTLQEGSVFGELSILNIAGSKNGNRRTANVRSVGYTDLFVLSKTD 594

  Fly   990 MWDVLKEYPAARVRLESIAVKRLEKYKK-------APLEKVKYFNVVAMGRCQSTPGLVESCGRT 1047
            :|:.|:|||.||   :.:..|..|..||       || |:.|....:|.....:...|.....|.
 Worm   595 LWNALREYPDAR---KLLLAKGREILKKDNLLDENAP-EEQKTVEEIAEHLNNAVKVLQTRMARL 655

  Fly  1048 SLEEMWLPPATAGASSLMHHHQALQQQHQASQQQPHRQESTQTSSQTHGYSPRSYADRLARATDS 1112
            .:|.    .:|.|  .||...:.| ::|.:..:...|::.|.     ||.|    .|....:|| 
 Worm   656 IVEH----SSTEG--KLMKRIEML-EKHLSRYKALARRQKTM-----HGVS----IDGGDISTD- 703

  Fly  1113 PRSVSPSAHGSEER---PRSRTT 1132
                     |.:||   ||.|.|
 Worm   704 ---------GVDERVRPPRLRQT 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42260NP_001356969.1 Ion_trans 581..819 CDD:334124 92/299 (31%)
CAP_ED 890..1004 CDD:237999 75/115 (65%)
DUF4655 1084..>1154 CDD:317882 15/52 (29%)
tax-4NP_499033.1 Ion_trans 197..421 CDD:278921 79/223 (35%)
Crp 487..680 CDD:223736 96/203 (47%)
CAP_ED 493..610 CDD:237999 75/119 (63%)
CLZ 609..675 CDD:293134 17/73 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0500
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3407
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1073751at2759
OrthoFinder 1 1.000 - - FOG0000167
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100817
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.670

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