DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo1 and Cntn3

DIOPT Version :9

Sequence 1:NP_476899.1 Gene:robo1 / 37603 FlyBaseID:FBgn0005631 Length:1395 Species:Drosophila melanogaster
Sequence 2:NP_062202.1 Gene:Cntn3 / 54279 RGDID:3253 Length:1028 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo1NP_476899.1 Ig 56..151 CDD:299845
I-set 56..150 CDD:254352
I-set 157..251 CDD:254352
Ig2_Robo 159..251 CDD:143201
I-set 255..341 CDD:254352
Ig3_Robo 272..341 CDD:143202
IG_like 351..436 CDD:214653
Ig 362..444 CDD:299845
I-set 445..531 CDD:254352
IGc2 459..521 CDD:197706
FN3 549..637 CDD:238020
FN3 673..762 CDD:238020
fn3 770..855 CDD:278470
Cntn3NP_062202.1 Ig 25..114 CDD:299845
I-set 26..117 CDD:254352
Ig 120..214 CDD:299845
IG_like 130..205 CDD:214653
Ig 227..315 CDD:299845
IG_like 234..313 CDD:214653
I-set 318..403 CDD:254352
Ig 320..403 CDD:299845
I-set 408..496 CDD:254352
Ig 424..496 CDD:299845
IG_like 506..594 CDD:214653
Ig 515..598 CDD:299845
FN3 598..695 CDD:238020
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 684..714
FN3 703..795 CDD:238020
FN3 805..898 CDD:238020
FN3 906..991 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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