DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo1 and igdcc3

DIOPT Version :9

Sequence 1:NP_476899.1 Gene:robo1 / 37603 FlyBaseID:FBgn0005631 Length:1395 Species:Drosophila melanogaster
Sequence 2:XP_002938404.3 Gene:igdcc3 / 100489799 XenbaseID:XB-GENE-922404 Length:764 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo1NP_476899.1 Ig 56..151 CDD:299845
I-set 56..150 CDD:254352
I-set 157..251 CDD:254352
Ig2_Robo 159..251 CDD:143201
I-set 255..341 CDD:254352
Ig3_Robo 272..341 CDD:143202
IG_like 351..436 CDD:214653
Ig 362..444 CDD:299845
I-set 445..531 CDD:254352
IGc2 459..521 CDD:197706
FN3 549..637 CDD:238020
FN3 673..762 CDD:238020
fn3 770..855 CDD:278470
igdcc3XP_002938404.3 Ig strand B 334..341 CDD:409353
Ig strand C 347..352 CDD:409353
Ig strand C' 354..357 CDD:409353
Ig strand E 369..376 CDD:409353
Ig strand F 383..391 CDD:409353
Ig strand G 394..404 CDD:409353
FN3 411..504 CDD:238020
fn3 509..589 CDD:394996
Ig 29..121 CDD:416386
Ig strand A' 34..40 CDD:409353
Ig strand B 44..54 CDD:409353
Ig strand C 58..64 CDD:409353
Ig strand C' 66..69 CDD:409353
Ig strand E 81..87 CDD:409353
Ig strand F 100..107 CDD:409353
Ig strand G 111..121 CDD:409353
Ig 132..214 CDD:416386
Ig strand A' 134..138 CDD:409353
Ig strand B 142..149 CDD:409353
Ig strand C 156..161 CDD:409353
Ig strand C' 163..166 CDD:409353
Ig strand D 172..176 CDD:409353
Ig strand E 179..185 CDD:409353
Ig strand F 192..200 CDD:409353
Ig strand G 203..214 CDD:409353
Ig strand A 226..229 CDD:409353
IG_like 231..308 CDD:214653
Ig strand A' 233..236 CDD:409353
Ig strand B 242..249 CDD:409353
Ig strand C 255..260 CDD:409353
Ig strand C' 263..265 CDD:409353
Ig strand D 271..274 CDD:409353
Ig strand E 277..282 CDD:409353
Ig strand F 290..298 CDD:409353
I-set 318..404 CDD:400151
Ig strand A' 321..327 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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