DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and AT1G80630

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_565242.1 Gene:AT1G80630 / 844402 AraportID:AT1G80630 Length:578 Species:Arabidopsis thaliana


Alignment Length:444 Identity:100/444 - (22%)
Similarity:179/444 - (40%) Gaps:105/444 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 RSSPSLFNCLVK-RGIKKVQILSLRRSLKDLVLGV------------------PALTSLNLS--G 243
            |:.|.|...|:: |.:|:::.....:.|..::|.|                  |.....|:.  .
plant    49 RAVPLLNRHLLRFRNLKRIRFSDFTQDLNSILLQVSRSGLDFESVDVSQTRYFPDFEMKNVKELK 113

  Fly   244 CFNV---ADMNLGHAFSVDLPNLKTLDLSL----CKQITDTSLGRIAQHLRNLETLELGGCCNIT 301
            |:.|   :|.:| .:..|:.|.|:.||:|.    ..:::|:.:..::.:|:.|..:.:.|...||
plant   114 CYGVGGFSDSDL-VSIGVNFPLLEKLDISYPNSSPSRVSDSGVIELSSNLKGLLKINISGNSFIT 177

  Fly   302 NTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR-------- 358
            :..|:.::.....|:.:..|.|..||...|..:...||...  :|.:..:||:..:.        
plant   178 DKSLIALSQNCLLLREIIFRDCDFISSDCIKFVLRNSRNLE--SLAINGIGLRPRESLLTDAFLF 240

  Fly   359 -------------LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLA-RMPKLEQLNLRSCDN 409
                         |||:.|..||.....||.:.||.|...|..|:.:|. :...|..|||:..:.
plant   241 ARCLTELDLSDSFLSDDLLCLIASAKLPLKKLLLSDCHGFTFDGILYLLDKYQSLVHLNLKGANF 305

  Fly   410 ISD-----IGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRS---------------- 453
            :||     :||.:     ..:..|::|||.|::..|...|.:....||.                
plant   306 LSDEMVMKLGMFF-----RRLTFLNLSFCSKLTGLAFFSIIERCVSLRCMIMVGTNFGVEEYTKD 365

  Fly   454 ------------LSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTID 506
                        ||.|. .:.|..:.||::....:|:|::.||..||..|:..:..:...|:::|
plant   366 TKDFKSGVKFLYLSRNH-NLLDECLEKISRHCPFIESLDVAQCPGITRDGILEVWRNCGKLRSLD 429

  Fly   507 LYGCTQLSSKGIDIIMKLPKLQKLN-LGLWL-----------VRXCVHHDCNAC 548
            :..||.:.|.|: :..:||||:.|. .|.|:           .| .:|.|...|
plant   430 ISRCTGIKSLGV-VDFELPKLESLRACGTWIDDEALDMISKKCRGLLHLDLQGC 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689
AMN1 <226..>334 CDD:187754 28/134 (21%)
leucine-rich repeat 236..256 CDD:275381 5/24 (21%)
leucine-rich repeat 263..288 CDD:275381 6/28 (21%)
leucine-rich repeat 289..314 CDD:275381 5/24 (21%)
leucine-rich repeat 315..347 CDD:275381 8/31 (26%)
AMN1 347..524 CDD:187754 52/231 (23%)
leucine-rich repeat 348..373 CDD:275381 8/45 (18%)
leucine-rich repeat 374..398 CDD:275381 8/24 (33%)
leucine-rich repeat 399..424 CDD:275381 8/29 (28%)
leucine-rich repeat 425..450 CDD:275381 7/24 (29%)
leucine-rich repeat 451..475 CDD:275381 8/51 (16%)
leucine-rich repeat 476..501 CDD:275381 7/24 (29%)
AT1G80630NP_565242.1 leucine-rich repeat 64..108 CDD:275381 5/43 (12%)
leucine-rich repeat 109..134 CDD:275381 5/25 (20%)
AMN1 121..335 CDD:187754 53/221 (24%)
leucine-rich repeat 135..159 CDD:275381 5/23 (22%)
leucine-rich repeat 165..190 CDD:275381 5/24 (21%)
leucine-rich repeat 191..216 CDD:275381 7/24 (29%)
leucine-rich repeat 244..268 CDD:275381 6/23 (26%)
leucine-rich repeat 269..294 CDD:275381 8/24 (33%)
leucine-rich repeat 295..320 CDD:275381 8/29 (28%)
leucine-rich repeat 321..346 CDD:275381 7/24 (29%)
leucine-rich repeat 347..398 CDD:275381 8/51 (16%)
AMN1 <386..508 CDD:187754 27/98 (28%)
leucine-rich repeat 399..424 CDD:275381 7/24 (29%)
leucine-rich repeat 425..448 CDD:275381 7/23 (30%)
leucine-rich repeat 449..473 CDD:275381 4/23 (17%)
leucine-rich repeat 474..499 CDD:275381 3/9 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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