DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and SKIP2

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_569047.1 Gene:SKIP2 / 836860 AraportID:AT5G67250 Length:527 Species:Arabidopsis thaliana


Alignment Length:426 Identity:103/426 - (24%)
Similarity:171/426 - (40%) Gaps:58/426 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 VEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKRSSPSLFNC 208
            |:.....:|..|.|..:|:.|...|..|.:.||..|............::||..:.....|:|| 
plant    38 VDRDFTGDLPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFN- 101

  Fly   209 LVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQ 273
                ....|..|:||...|.:.|...||..:                 ||...||..:.|..|::
plant   102 ----RFDSVTKLALRCDRKSVSLSDEALAMI-----------------SVRCLNLTRVKLRGCRE 145

  Fly   274 ITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG-IGHL--- 334
            |||..:...|::.:||:.|.:|. ||....|:..:....|.|:.|:::....|.:.. :.||   
plant   146 ITDLGMEDFAKNCKNLKKLSVGS-CNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDD 209

  Fly   335 AGFS-------RETAEGNL---------QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
            |..|       :|...|.:         .|:.|.:..|....|:.|..||.|.:||..|:|. .:
plant   210 ASSSSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCLGDWDKVLQMIANGKSSLSEIHLE-RL 273

  Fly   384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVS--FCDKISDQALTHIAQ 446
            .|:|.||..:::...:|.|::......|:.|:.|:.|....:..|.:.  ..::|.|:.|..:|:
plant   274 QVSDIGLSAISKCSNVETLHIVKTPECSNFGLIYVAERCKLLRKLHIDGWRTNRIGDEGLLSVAK 338

  Fly   447 GLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCT 511
            ....|:.|.|.....|...:..||....:||.|.:.....|.|..:..:|.....|:...:.|| 
plant   339 HCLNLQELVLIGVNATHMSLAAIASNCEKLERLALCGSGTIGDTEIACIARKCGALRKFCIKGC- 402

  Fly   512 QLSSKGID-IIMKLPKLQKL----------NLGLWL 536
            .:|.:||: :.:..|.|.||          .:|.||
plant   403 PVSDRGIEALAVGCPNLVKLKVKKCKVVTGEIGDWL 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 10/40 (25%)
AMN1 <226..>334 CDD:187754 25/108 (23%)
leucine-rich repeat 236..256 CDD:275381 1/19 (5%)
leucine-rich repeat 263..288 CDD:275381 7/24 (29%)
leucine-rich repeat 289..314 CDD:275381 6/24 (25%)
leucine-rich repeat 315..347 CDD:275381 9/51 (18%)
AMN1 347..524 CDD:187754 45/179 (25%)
leucine-rich repeat 348..373 CDD:275381 8/24 (33%)
leucine-rich repeat 374..398 CDD:275381 7/23 (30%)
leucine-rich repeat 399..424 CDD:275381 6/24 (25%)
leucine-rich repeat 425..450 CDD:275381 5/26 (19%)
leucine-rich repeat 451..475 CDD:275381 6/23 (26%)
leucine-rich repeat 476..501 CDD:275381 6/24 (25%)
SKIP2NP_569047.1 F-box-like 45..>73 CDD:403981 9/27 (33%)
AMN1 82..295 CDD:187754 58/236 (25%)
leucine-rich repeat 106..128 CDD:275381 8/21 (38%)
leucine-rich repeat 135..160 CDD:275381 7/24 (29%)
leucine-rich repeat 161..185 CDD:275381 6/24 (25%)
leucine-rich repeat 239..264 CDD:275381 8/24 (33%)
leucine-rich repeat 265..288 CDD:275381 7/23 (30%)
leucine-rich repeat 289..314 CDD:275381 6/24 (25%)
AMN1 <311..>416 CDD:187754 23/105 (22%)
leucine-rich repeat 315..342 CDD:275381 5/26 (19%)
leucine-rich repeat 343..367 CDD:275381 6/23 (26%)
leucine-rich repeat 368..393 CDD:275381 6/24 (25%)
leucine-rich repeat 394..418 CDD:275381 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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