DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and AT5G01720

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_568094.2 Gene:AT5G01720 / 831688 AraportID:AT5G01720 Length:665 Species:Arabidopsis thaliana


Alignment Length:441 Identity:109/441 - (24%)
Similarity:172/441 - (39%) Gaps:138/441 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 QILSLRRSLKDL--------------VLGV---PALTSLNL--SGCFNVADMNLGHAFSVDLPNL 263
            :||:..|:..||              |:|.   |.|.||:|  ||.|:.|.:   ...::...||
plant    66 RILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGPTLRSLDLSRSGSFSAAGL---LRLALKCVNL 127

  Fly   264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISD 328
            ..:|||...::.|.....:|: .|:||.|:||.|..:|:.|:..||.|.|||..::|:.|..:.|
plant   128 VEIDLSNATEMRDADAAVVAE-ARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTVSLKWCVGVGD 191

  Fly   329 QGIGHLAGFSRETAEGNLQLEYL-------------------------GLQD------------- 355
            .|:|.||...::..  .|.|.||                         |:.|             
plant   192 LGVGLLAVKCKDIR--TLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDDDSLKSLRHDCKSL 254

  Fly   356 -------CQRLSDEALGHIAQGLTSLKSINLSFC-------------------------VSVTDS 388
                   ||.|:...|..:..|...|:.::||.|                         .|||..
plant   255 KKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLKKVSALQSIRLDGCSVTPD 319

  Fly   389 GLKHLARM-PKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLR 452
            |||.:..: ..|::::|..|.:::|.|::.|......:..||::.|.|:|..::|.||.....|.
plant   320 GLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQIANSCPLLV 384

  Fly   453 SLSLNQC--------------------------QITDHGMLKIAKALHELENLNIGQCSRITDKG 491
            ||.:..|                          :|.|.|:..|:..| .|.:|.:|.|..|||||
plant   385 SLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDDEGLKSISSCL-SLSSLKLGICLNITDKG 448

  Fly   492 LQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVRXCVH 542
            |..:....:||:.:|||....::..||..|               .: |:|
plant   449 LSYIGMGCSNLRELDLYRSVGITDVGISTI---------------AQGCIH 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689
AMN1 <226..>334 CDD:187754 40/126 (32%)
leucine-rich repeat 236..256 CDD:275381 8/21 (38%)
leucine-rich repeat 263..288 CDD:275381 6/24 (25%)
leucine-rich repeat 289..314 CDD:275381 11/24 (46%)
leucine-rich repeat 315..347 CDD:275381 8/31 (26%)
AMN1 347..524 CDD:187754 61/273 (22%)
leucine-rich repeat 348..373 CDD:275381 10/69 (14%)
leucine-rich repeat 374..398 CDD:275381 10/49 (20%)
leucine-rich repeat 399..424 CDD:275381 6/24 (25%)
leucine-rich repeat 425..450 CDD:275381 8/24 (33%)
leucine-rich repeat 451..475 CDD:275381 9/49 (18%)
leucine-rich repeat 476..501 CDD:275381 10/24 (42%)
AT5G01720NP_568094.2 AMN1 60..>201 CDD:187754 45/138 (33%)
leucine-rich repeat 74..93 CDD:275381 2/18 (11%)
leucine-rich repeat 101..126 CDD:275381 8/27 (30%)
leucine-rich repeat 127..151 CDD:275381 6/24 (25%)
leucine-rich repeat 152..172 CDD:275381 8/19 (42%)
leucine-rich repeat 178..203 CDD:275381 8/24 (33%)
AMN1 196..372 CDD:187754 34/177 (19%)
leucine-rich repeat 204..247 CDD:275381 6/44 (14%)
leucine-rich repeat 254..279 CDD:275381 5/24 (21%)
leucine-rich repeat 280..330 CDD:275381 10/49 (20%)
AMN1 <328..500 CDD:187754 43/173 (25%)
leucine-rich repeat 331..356 CDD:275381 6/24 (25%)
leucine-rich repeat 357..382 CDD:275381 8/24 (33%)
leucine-rich repeat 383..408 CDD:275381 4/24 (17%)
leucine-rich repeat 409..458 CDD:275381 15/49 (31%)
AMN1 <441..567 CDD:187754 17/59 (29%)
leucine-rich repeat 459..484 CDD:275381 8/39 (21%)
leucine-rich repeat 485..507 CDD:275381 109/441 (25%)
leucine-rich repeat 510..535 CDD:275381
leucine-rich repeat 536..561 CDD:275381
leucine-rich repeat 562..585 CDD:275381
leucine-rich repeat 586..609 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1282076at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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