DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and AT5G07670

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_196384.2 Gene:AT5G07670 / 830660 AraportID:AT5G07670 Length:476 Species:Arabidopsis thaliana


Alignment Length:474 Identity:115/474 - (24%)
Similarity:178/474 - (37%) Gaps:147/474 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 HHHHHLPHRP----ASPES-PPPVEGT-----HISNLFPEL-LEQIFEHLPVRDLGRAAQVCTAW 179
            :|||.|...|    |..:| .||:..:     ..:.|.|:| |.::.:.:|.......:.||..|
plant    28 NHHHLLSSSPLDLAAKFQSLTPPISKSKTLLPDFTLLLPDLILIRVIQKIPNSQRKNLSLVCKRW 92

  Fly   180 RDAAYAKSVWKGVEAKLH--LKRSSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLS 242
                          .:||  |.||                                         
plant    93 --------------FRLHGRLVRS----------------------------------------- 102

  Fly   243 GCFNVAD---MNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHL------------------ 286
              |.|:|   ::.|...| ..|||:|:||.....|:..:||.:..|.                  
plant   103 --FKVSDWEFLSSGRLIS-RFPNLETVDLVSGCLISPPNLGILVNHRIVSFTVGVGSYQSWSFFE 164

  Fly   287 RNLETLEL---------GGCCN-----ITNT---GLLLIAWGLKKLKHLNLRSCWHISDQ---GI 331
            .||.::||         |||.|     :|||   |||.:|....:|:.|.|..|   ||.   ||
plant   165 ENLLSVELVERGLKALAGGCSNLRKLVVTNTSELGLLNVAEECSRLQELELHKC---SDSVLLGI 226

  Fly   332 GHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR- 395
            |...........||:...|..|     :||..|..:|||...|..:.|..|....| |:|.:.. 
plant   227 GAFENLQILRLVGNVDGLYNSL-----VSDIGLMILAQGCKRLVKLELVGCEGGFD-GIKEIGEC 285

  Fly   396 MPKLEQLNLRSCDNISDIGMAYLTEGG----SGINSLDVSFCDKIS---DQALTHIAQGLYRLRS 453
            ...||:|.:  |||..:.|..    ||    ..:.:|.:..|.||.   |::|:.....|.||: 
plant   286 CQMLEELTV--CDNKMESGWL----GGLRYCENLKTLKLVSCKKIDNDPDESLSCCCPALERLQ- 343

  Fly   454 LSLNQCQITD----HGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLS 514
              |.:||:.|    ..:.|:.:|..|:    :.|.....|..:.:||.....:|.:.|.||:.|:
plant   344 --LEKCQLRDKNTVKALFKMCEAAREI----VFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLT 402

  Fly   515 SKGID-IIMKLPKLQKLNL 532
            :.|:: :|:...:|:.|.:
plant   403 TSGLESVILHWHELEHLKV 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 8/41 (20%)
AMN1 <226..>334 CDD:187754 39/148 (26%)
leucine-rich repeat 236..256 CDD:275381 4/22 (18%)
leucine-rich repeat 263..288 CDD:275381 8/42 (19%)
leucine-rich repeat 289..314 CDD:275381 14/41 (34%)
leucine-rich repeat 315..347 CDD:275381 11/34 (32%)
AMN1 347..524 CDD:187754 50/189 (26%)
leucine-rich repeat 348..373 CDD:275381 8/24 (33%)
leucine-rich repeat 374..398 CDD:275381 6/24 (25%)
leucine-rich repeat 399..424 CDD:275381 9/28 (32%)
leucine-rich repeat 425..450 CDD:275381 7/27 (26%)
leucine-rich repeat 451..475 CDD:275381 7/27 (26%)
leucine-rich repeat 476..501 CDD:275381 4/24 (17%)
AT5G07670NP_196384.2 leucine-rich repeat 187..209 CDD:275381 7/21 (33%)
AMN1 206..361 CDD:187754 47/172 (27%)
leucine-rich repeat 210..231 CDD:275381 9/23 (39%)
leucine-rich repeat 232..263 CDD:275381 10/35 (29%)
leucine-rich repeat 264..288 CDD:275381 6/24 (25%)
leucine-rich repeat 289..312 CDD:275381 9/28 (32%)
AMN1 291..>433 CDD:187754 36/144 (25%)
leucine-rich repeat 313..338 CDD:275381 6/24 (25%)
leucine-rich repeat 339..389 CDD:275381 14/56 (25%)
leucine-rich repeat 390..415 CDD:275381 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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