DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and AT4G36140

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_195337.1 Gene:AT4G36140 / 829771 AraportID:AT4G36140 Length:1607 Species:Arabidopsis thaliana


Alignment Length:484 Identity:103/484 - (21%)
Similarity:176/484 - (36%) Gaps:148/484 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 AQHHHHHHHHLPHRPASPESPPPVEGTHISNLFPELLEQI-FEHLPVRDLGRAAQVC-TAWRDAA 183
            :.:.:|:...||            :|.   ...|:.|..: :|:.|::.|.:....| ....:.:
plant   968 SSYENHYSLRLP------------KGL---KFLPDELRLLHWENYPLQSLPQDFDPCHLVELNLS 1017

  Fly   184 YA--KSVWKGVEA-------KLHLKRSSPSLFNCLVKRGIKKVQILSLRRSLKDLVLG-VPALTS 238
            |:  :.:|.|.::       ||...:...::.:.|..:.|:.:.:...|:..:....| :..|..
plant  1018 YSQLQKLWAGTKSLEMLKVVKLCHSQQLTAIDDILKAQNIELIDLQGCRKLQRFPATGQLQHLRV 1082

  Fly   239 LNLSGCFNVADMNLGHAFSVDLPNLKTLDL-------------SLCKQITDTSLGRIAQHLRNLE 290
            :|||||..:      .:|....||::.|.|             ||.:|      .::.:.|.|| 
plant  1083 VNLSGCREI------KSFPEVSPNIEELHLQGTGIRELPISIVSLFEQ------AKLNRELFNL- 1134

  Fly   291 TLELGGCCNITN-------TGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQL 348
            ..|..|..|..|       ..|:.....|.||..||::.|.|:  :.:.::..|.        .|
plant  1135 LPEFSGVSNAWNNEQSTSLAKLVTSTQNLGKLVCLNMKDCVHL--RKLPYMVDFE--------SL 1189

  Fly   349 EYLGLQDCQRLSDEALGHIAQGL-TSLKSINLSFCVSVTDSGLKHLARMPK-LEQLNLRSCDNIS 411
            :.|.|..|..|.|      .:|. .:||.:.|      ..:.||.|.::|: ||.||...|.::.
plant  1190 KVLNLSGCSDLDD------IEGFPPNLKELYL------VSTALKELPQLPQSLEVLNAHGCVSLL 1242

  Fly   412 DIGM------AYLTEGGSGINSLDVSFCDKISDQALT---HIAQGLYRL-RSLSLNQCQITDHGM 466
            .|..      .|.|  .|...:|..|..::....|||   |||:....| :||:||         
plant  1243 SIPSNFERLPRYYT--FSNCFALSASVVNEFVKNALTNVAHIAREKQELNKSLALN--------- 1296

  Fly   467 LKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLY-GCT---QLSS-----KGIDIIM 522
                ..:...|:.||                      |.||. |.:   ||.|     :|..|::
plant  1297 ----FTVPSPESKNI----------------------TFDLQPGSSVIIQLGSSWRLIRGFAILV 1335

  Fly   523 KLPKLQKLNLGL--------WLVRXCVHH 543
            ::..|::...|.        |....||.|
plant  1336 EVAFLEEYQAGAFSISCVCRWKDTECVSH 1364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 7/44 (16%)
AMN1 <226..>334 CDD:187754 30/128 (23%)
leucine-rich repeat 236..256 CDD:275381 6/19 (32%)
leucine-rich repeat 263..288 CDD:275381 6/37 (16%)
leucine-rich repeat 289..314 CDD:275381 7/31 (23%)
leucine-rich repeat 315..347 CDD:275381 6/31 (19%)
AMN1 347..524 CDD:187754 48/197 (24%)
leucine-rich repeat 348..373 CDD:275381 7/25 (28%)
leucine-rich repeat 374..398 CDD:275381 6/23 (26%)
leucine-rich repeat 399..424 CDD:275381 8/30 (27%)
leucine-rich repeat 425..450 CDD:275381 8/27 (30%)
leucine-rich repeat 451..475 CDD:275381 5/24 (21%)
leucine-rich repeat 476..501 CDD:275381 3/24 (13%)
AT4G36140NP_195337.1 TIR 50..259 CDD:279864
AAA_17 291..>325 CDD:289950
PLN03210 449..>1269 CDD:215633 74/352 (21%)
TIR 449..579 CDD:279864
AAA_16 607..716 CDD:289934
leucine-rich repeat 960..988 CDD:275380 5/34 (15%)
leucine-rich repeat 989..1010 CDD:275380 4/20 (20%)
LRR_3 1010..1029 CDD:285026 3/18 (17%)
leucine-rich repeat 1011..1033 CDD:275380 3/21 (14%)
leucine-rich repeat 1034..1056 CDD:275380 3/21 (14%)
leucine-rich repeat 1057..1079 CDD:275380 3/21 (14%)
leucine-rich repeat 1080..1100 CDD:275380 7/25 (28%)
leucine-rich repeat 1101..1143 CDD:275380 10/48 (21%)
leucine-rich repeat 1166..1188 CDD:275380 6/31 (19%)
leucine-rich repeat 1210..1229 CDD:275380 7/24 (29%)
leucine-rich repeat 1230..1251 CDD:275380 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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