DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Ppa and AT4G05470

DIOPT Version :9

Sequence 1:	NP_001261138.1	Gene:	Ppa / 37602	FlyBaseID:	FBgn0020257	Length:	562	Species:	Drosophila melanogaster
Sequence 2:	NP_001319875.1	Gene:	AT4G05470 / 825897	AraportID:	AT4G05470	Length:	306	Species:	Arabidopsis thaliana

Alignment Length:	271	Identity:	74/271 - (27%)
Similarity:	117/271 - (43%)	Gaps:	47/271 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   151 NLFPELLEQIFEHLPVRD-LGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKRSSPSLFNCLVKRGI 214
            :|.|||...|...|.:.| |..|.:||..||......|:|:.:..:           :||    :
plant    48 DLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTR-----------DCL----M 97

  Fly   215 KKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSVDLP-NLKTLDLSLC-KQITDT 277
            .....:|:.|.:.||..|  .|..:|:...| ::|..|  ::..|.. ||::|.|.:| .::|..
plant    98 YNFDFVSMCRHIVDLSQG--GLLEINVDEHF-LSDSLL--SYITDRSRNLRSLGLGMCFPRVTKL 157

  Fly   278 SLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRS---CWHISDQGIGHLAGFSR 339
            .:......:..|||||:...|  ....|..|.....:||.|.|.|   .|..||:
plant   158 GVVNAIAKIPLLETLEVTHSC--IKLDLKAIGHACPQLKTLKLNSLGRLWPASDK---------- 210

  Fly   340 ETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKH-LARMPKLEQLN 403
              .:.|: |:.:|..:|   .|:||. ||:.:..|..:.| ....:|::||.. |...|.||.|:
plant   211 --YDSNV-LDDMGPLEC---DDDALA-IAESMPKLHHLQL-MANRLTNTGLNAILDGCPHLEHLD 267

  Fly   404 LRSCDNISDIG 414
            :|.|..||.:|
plant   268 VRKCFRISLVG 278

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Ppa	NP_001261138.1	F-box-like	149..190	CDD:289689	14/39 (36%)
		AMN1	<226..>334	CDD:187754	31/112 (28%)
		leucine-rich repeat	236..256	CDD:275381	5/19 (26%)
		leucine-rich repeat	263..288	CDD:275381	5/25 (20%)
		leucine-rich repeat	289..314	CDD:275381	8/24 (33%)
		leucine-rich repeat	315..347	CDD:275381	9/34 (26%)
		AMN1	347..524	CDD:187754	23/69 (33%)
		leucine-rich repeat	348..373	CDD:275381	8/24 (33%)
		leucine-rich repeat	374..398	CDD:275381	6/24 (25%)
		leucine-rich repeat	399..424	CDD:275381	8/16 (50%)
		leucine-rich repeat	425..450	CDD:275381
		leucine-rich repeat	451..475	CDD:275381
		leucine-rich repeat	476..501	CDD:275381
AT4G05470	NP_001319875.1	None
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1947
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810