DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and AT3G58530

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_567069.1 Gene:AT3G58530 / 825022 AraportID:AT3G58530 Length:353 Species:Arabidopsis thaliana


Alignment Length:337 Identity:92/337 - (27%)
Similarity:167/337 - (49%) Gaps:39/337 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 VQILSLRRSLKDLV-------------LGVPAL-TSLNLSGCFNVADMNLGHAFSVDLP---NLK 264
            ::::|.|....||:             :..|:: .::||....|..|..|.   ::.||   .:|
plant    23 MRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLA---ALSLPRYRQVK 84

  Fly   265 TLDLSLCKQITDTSLGRIAQH----LRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWH 325
            .::|...:.:.|:.|..:...    |.:||.|.|..|..|::.|:..|.....|||..::.....
plant    85 HINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPKLKVFSIYWNVR 149

  Fly   326 ISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSG- 389
            ::|.||.:|....|...:       |.|..|:.|:|:::..:|:....|:|:|::.||.:||.| 
plant   150 VTDAGIRNLVKNCRHITD-------LNLSGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGL 207

  Fly   390 LKHLARMPKLEQLNLRSCDNISDIGMAYLTEG-GSGINSLDVSFCDKISDQALTHIAQGLYRLRS 453
            |:.|.:...|:.|||.:....:|  .||:... .:.:..||:.....|||:.:.|||: ..:|.|
plant   208 LQVLQKCFSLQTLNLYALSGFTD--KAYMKISLLADLRFLDICGAQNISDEGIGHIAK-CNKLES 269

  Fly   454 LSLNQC-QITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDL-TNLKTIDLYGCTQLSSK 516
            |:|..| :|||.|:..||.:...||.|::.....:||:.|:||::.. |.|.|:|:.|||.:..:
plant   270 LNLTWCVRITDAGVNTIANSCTSLEFLSLFGIVGVTDRCLETLSQTCSTTLTTLDVNGCTGIKRR 334

  Fly   517 GIDIIMKL-PKL 527
            ..:.:::: |:|
plant   335 SREELLQMFPRL 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689
AMN1 <226..>334 CDD:187754 29/128 (23%)
leucine-rich repeat 236..256 CDD:275381 5/20 (25%)
leucine-rich repeat 263..288 CDD:275381 5/28 (18%)
leucine-rich repeat 289..314 CDD:275381 8/24 (33%)
leucine-rich repeat 315..347 CDD:275381 7/31 (23%)
AMN1 347..524 CDD:187754 57/180 (32%)
leucine-rich repeat 348..373 CDD:275381 6/24 (25%)
leucine-rich repeat 374..398 CDD:275381 10/24 (42%)
leucine-rich repeat 399..424 CDD:275381 7/25 (28%)
leucine-rich repeat 425..450 CDD:275381 8/24 (33%)
leucine-rich repeat 451..475 CDD:275381 11/24 (46%)
leucine-rich repeat 476..501 CDD:275381 8/25 (32%)
AT3G58530NP_567069.1 leucine-rich repeat 30..55 CDD:275381 3/24 (13%)
leucine-rich repeat 56..75 CDD:275381 5/21 (24%)
leucine-rich repeat 83..112 CDD:275381 5/28 (18%)
AMN1 113..342 CDD:187754 73/238 (31%)
leucine-rich repeat 113..138 CDD:275381 8/24 (33%)
leucine-rich repeat 139..164 CDD:275381 6/24 (25%)
leucine-rich repeat 165..190 CDD:275381 6/31 (19%)
leucine-rich repeat 191..216 CDD:275381 10/24 (42%)
leucine-rich repeat 217..266 CDD:275381 15/51 (29%)
leucine-rich repeat 267..292 CDD:275381 11/24 (46%)
leucine-rich repeat 293..318 CDD:275381 8/24 (33%)
leucine-rich repeat 320..339 CDD:275381 6/18 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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