DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Ppa and ssbp1

DIOPT Version :9

Sequence 1:	NP_001261138.1	Gene:	Ppa / 37602	FlyBaseID:	FBgn0020257	Length:	562	Species:	Drosophila melanogaster
Sequence 2:	NP_001072658.1	Gene:	ssbp1 / 780115	XenbaseID:	XB-GENE-979709	Length:	148	Species:	Xenopus tropicalis

Alignment Length:	145	Identity:	32/145 - (22%)
Similarity:	52/145 - (35%)	Gaps:	42/145 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly   257 SVDLPNLKTLDLSLCK-QITDTSLGRIAQH-------------LRNLETLEL--GGCCNITNTGL 305
            |.|.|: ..|:.||.| |:    |||:.|.             :.:|.|.||  .|...:..|.
Frog    18 SSDAPS-HILERSLNKVQL----LGRVGQDPVMRQADGKNPVTIFSLATNELWRSGESEVFQTA- 76

  Fly   306 LLIAWGLKKLKHLNLRSCWH--------ISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDE 362
                      ..:|.::.||        :.|....|:...:|...||  :::|....|...:..:
Frog    77 ----------GDVNQKTTWHRVSVFRPGLRDVAYQHVKKGARLFVEG--KIDYGEYTDKNNVRRQ 129

  Fly   363 ALGHIAQGLTSLKSI 377
            |...||..:..|..:
Frog   130 ATTIIADNIIFLSDL 144

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Ppa	NP_001261138.1	F-box-like	149..190	CDD:289689
		AMN1	<226..>334	CDD:187754	22/100 (22%)
		leucine-rich repeat	236..256	CDD:275381
		leucine-rich repeat	263..288	CDD:275381	9/38 (24%)
		leucine-rich repeat	289..314	CDD:275381	6/26 (23%)
		leucine-rich repeat	315..347	CDD:275381	8/39 (21%)
		AMN1	347..524	CDD:187754	6/31 (19%)
		leucine-rich repeat	348..373	CDD:275381	5/24 (21%)
		leucine-rich repeat	374..398	CDD:275381	1/4 (25%)
		leucine-rich repeat	399..424	CDD:275381
		leucine-rich repeat	425..450	CDD:275381
		leucine-rich repeat	451..475	CDD:275381
		leucine-rich repeat	476..501	CDD:275381
ssbp1	NP_001072658.1	RPA_2b-aaRSs_OBF_like	27..>142	CDD:385638	27/131 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1947
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810