DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and fbxl15

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001011123.1 Gene:fbxl15 / 496536 XenbaseID:XB-GENE-973058 Length:292 Species:Xenopus tropicalis


Alignment Length:304 Identity:69/304 - (22%)
Similarity:130/304 - (42%) Gaps:81/304 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 DMNLGHAFSVD-----LPNLKTLDLSLCKQITDTSLG------RIAQHLRN---LETLELGGCCN 299
            ::.|.|..|:.     ..:|..|.|:.|:....|.||      ..::.|||   |:.|:|..||:
 Frog    28 NLPLRHILSLQRVSKPFQSLVHLYLANCRHFDSTQLGSQLPKSTFSELLRNNTVLQKLDLQSCCD 92

  Fly   300 -ITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 363
             :|:..||.:......|.|:||.||..::.|                                  
 Frog    93 WLTDKELLPVIGQNHHLIHINLNSCGQLTRQ---------------------------------- 123

  Fly   364 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 428
                     ||.:|:|| |              |.|:.:.|..|:.:..:.:..|.:....:.::
 Frog   124 ---------SLVAISLS-C--------------PHLQNICLGHCEWVDCLSLRSLVDHCKCLEAI 164

  Fly   429 DVSFCDKISDQALTHIAQGLYRLRSLSLN-QCQITDHGMLKIAKALHELENLNIGQCSRITDKGL 492
            |::.|.::.|..::::.|...||:||||. ...|:|..:.:.||...:||:|::..|.|:.:..:
 Frog   165 DLTACRQLKDDTISYLVQKSTRLKSLSLAVNANISDIAVEETAKNCRDLEHLDLTGCLRVKNDSI 229

  Fly   493 QTLAEDLTNLKTIDLYGCTQLSSKGI------DIIMKL-PKLQK 529
            :||||..|.||::.:..|..::...:      ::::.: |.||:
 Frog   230 RTLAEYCTKLKSLKVKHCHNVTESSLGNLRKREVVLDVEPPLQR 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689
AMN1 <226..>334 CDD:187754 28/99 (28%)
leucine-rich repeat 236..256 CDD:275381 2/6 (33%)
leucine-rich repeat 263..288 CDD:275381 8/30 (27%)
leucine-rich repeat 289..314 CDD:275381 8/25 (32%)
leucine-rich repeat 315..347 CDD:275381 7/31 (23%)
AMN1 347..524 CDD:187754 38/183 (21%)
leucine-rich repeat 348..373 CDD:275381 0/24 (0%)
leucine-rich repeat 374..398 CDD:275381 5/23 (22%)
leucine-rich repeat 399..424 CDD:275381 4/24 (17%)
leucine-rich repeat 425..450 CDD:275381 4/24 (17%)
leucine-rich repeat 451..475 CDD:275381 9/24 (38%)
leucine-rich repeat 476..501 CDD:275381 9/24 (38%)
fbxl15NP_001011123.1 leucine-rich repeat 47..81 CDD:275381 10/33 (30%)
AMN1 65..251 CDD:187754 56/243 (23%)
leucine-rich repeat 82..108 CDD:275381 8/25 (32%)
leucine-rich repeat 109..134 CDD:275381 13/82 (16%)
LRR 1 134..155 3/20 (15%)
leucine-rich repeat 135..160 CDD:275381 4/24 (17%)
LRR 2 160..181 3/20 (15%)
leucine-rich repeat 161..186 CDD:275381 4/24 (17%)
LRR 3 186..207 8/20 (40%)
leucine-rich repeat 187..212 CDD:275381 9/24 (38%)
LRR 4 212..233 6/20 (30%)
leucine-rich repeat 213..238 CDD:275381 9/24 (38%)
LRR 5 238..259 3/20 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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