DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and Fbxl16

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:XP_038942467.1 Gene:Fbxl16 / 494223 RGDID:1309127 Length:488 Species:Rattus norvegicus


Alignment Length:506 Identity:133/506 - (26%)
Similarity:221/506 - (43%) Gaps:99/506 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 ELPGLTR-TGATTTHHHLLRFTPYALHH--RPPHHQLQTLPP---ALYLQHAAAAAAAAAAAAAH 120
            :|||... .||.:    :.:.||.|.:.  :||  ...||||   |..|...|.|......|:. 
  Rat    22 KLPGQPNGLGAAS----ITKGTPAAKNRPCQPP--PPPTLPPPSLATPLSRVALAGGPCPPASG- 79

  Fly   121 AQHHHHHHHHLPHRPAS-PESPPPVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAY 184
                          ||| |...||||...::. ..::|..:|.:....:....||||.|||...|
  Rat    80 --------------PASGPVPGPPVERPPLAT-DEKILNGLFWYFSACEKCILAQVCKAWRRVLY 129

  Fly   185 AKSVWKGVEAKLHLKRSSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSG------ 243
            ....|.|:...||.|    .|:|.| ..|.|:.                     :||.|      
  Rat   130 QPKFWAGLTPVLHAK----ELYNVL-PGGEKEF---------------------VNLQGFAARGF 168

  Fly   244 ---CF-NVADMNLGH---AFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNIT 301
               |. .|:|:::..   .:|:....:|.:.|.. ..|||..|..:.:.::.:..|||.||.:.|
  Rat   169 EGFCLVGVSDLDICEFIDNYSLSKKGVKAMSLKR-STITDAGLEVMLEQMQGVVRLELSGCNDFT 232

  Fly   302 NTGLLLIAWG--LKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEAL 364
            ..||    |.  ..::..|::..|.:::|..|..::......||.:||        ...::|.||
  Rat   233 EAGL----WSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQ--------AYHVTDTAL 285

  Fly   365 GHIA--QGLTSLKSINLSFCVSVTDSGLKHLAR-MPKLEQLNLRSCDNISDIGMAYLTEGGSGIN 426
            .:..  || .|..::.|..|..:|:.|:.::.. :|.|..|:|..|..::|.|:..:.|....:.
  Rat   286 AYFTARQG-HSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENLRKLR 349

  Fly   427 SLDVSFCDKISDQALTHIAQGLYRLRSLSLNQC----------QITDHGMLKIAKALHELENLNI 481
            |||:|:|.:|:|.||.::|..|:||..|.|::|          :|||.| |.....:..|.:|.:
  Rat   350 SLDLSWCPRITDMALEYVACDLHRLEELVLDRCTHPYTPGWCVRITDTG-LSYLSTMSSLRSLYL 413

  Fly   482 GQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
            ..|.::.|.||:.|.. :.:|:.:.|.||..|::.|:..:::|.:|::|.|
  Rat   414 RWCCQVQDFGLKHLLA-MRSLRLLSLAGCPLLTTTGLSGLVQLQELEELEL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 10/40 (25%)
AMN1 <226..>334 CDD:187754 26/122 (21%)
leucine-rich repeat 236..256 CDD:275381 6/32 (19%)
leucine-rich repeat 263..288 CDD:275381 6/24 (25%)
leucine-rich repeat 289..314 CDD:275381 9/26 (35%)
leucine-rich repeat 315..347 CDD:275381 6/31 (19%)
AMN1 347..524 CDD:187754 53/189 (28%)
leucine-rich repeat 348..373 CDD:275381 5/26 (19%)
leucine-rich repeat 374..398 CDD:275381 4/24 (17%)
leucine-rich repeat 399..424 CDD:275381 7/24 (29%)
leucine-rich repeat 425..450 CDD:275381 11/24 (46%)
leucine-rich repeat 451..475 CDD:275381 9/33 (27%)
leucine-rich repeat 476..501 CDD:275381 7/24 (29%)
Fbxl16XP_038942467.1 leucine-rich repeat 195..219 CDD:275381 6/24 (25%)
AMN1 201..422 CDD:187754 63/235 (27%)
leucine-rich repeat 220..243 CDD:275381 9/26 (35%)
leucine-rich repeat 244..269 CDD:275381 4/24 (17%)
leucine-rich repeat 270..321 CDD:275381 14/59 (24%)
leucine-rich repeat 322..347 CDD:275381 7/24 (29%)
leucine-rich repeat 348..373 CDD:275381 11/24 (46%)
leucine-rich repeat 374..407 CDD:275381 9/33 (27%)
leucine-rich repeat 408..427 CDD:275381 6/18 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1282076at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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