DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and CG5003

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster


Alignment Length:339 Identity:72/339 - (21%)
Similarity:117/339 - (34%) Gaps:121/339 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 HHHHHHHHLPHRPASPESPPPVEGTHISNLFPELLEQIFEHLPVRDLGRAAQ------VCTAWRD 181
            |..:||..|.:.|                |...:||:|        ||||.:      :|     
  Fly   106 HRFYHHIDLSNGP----------------LPMGILEEI--------LGRATEKTHTIKIC----- 141

  Fly   182 AAYAKSVWKGVEAKLHL-------KRSSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSL 239
                     |..:..|:       .::..|:|..:|:..:.:::.:||......:......|..|
  Fly   142 ---------GPPSSQHVAGEFRQFTQTLSSVFPRVVQLKVLELEGVSLDFEYIHITEFPATLRRL 197

  Fly   240 NLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTS-------LGRIAQHLRNLETLELGG 296
            .|..| ..|.|......:|::|..|...|||    |.|.|       :|  ...|.:|..|.|.|
  Fly   198 KLKDCSVRVGDTPKSIFYSIELHLLDLEDLS----IEDNSWFEPYYIMG--LSKLPSLRRLSLKG 256

  Fly   297 C---CNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLE-YLGLQDCQ 357
            |   |.....|.:...:|.:||:.|:|                  |:|...|..|: :..:::.:
  Fly   257 CQALCKFVPYGSMAARFGFQKLESLDL------------------RQTPINNSDLQCFSAIENLK 303

  Fly   358 RLSDEA--LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQL----------------NL 404
            .|..|:  :.|..|.:.. |:.|    .:.||.     |..|:.:.|                :|
  Fly   304 ELLLESPQILHSKQAVAK-KNTN----GNATDE-----AASPQPDSLKVLSDDEPSTSRAAMEHL 358

  Fly   405 RSC------DNISD 412
            |:|      ||.||
  Fly   359 RACKVAFNLDNCSD 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 9/46 (20%)
AMN1 <226..>334 CDD:187754 29/118 (25%)
leucine-rich repeat 236..256 CDD:275381 6/20 (30%)
leucine-rich repeat 263..288 CDD:275381 9/31 (29%)
leucine-rich repeat 289..314 CDD:275381 8/27 (30%)
leucine-rich repeat 315..347 CDD:275381 6/31 (19%)
AMN1 347..524 CDD:187754 19/91 (21%)
leucine-rich repeat 348..373 CDD:275381 5/27 (19%)
leucine-rich repeat 374..398 CDD:275381 5/23 (22%)
leucine-rich repeat 399..424 CDD:275381 8/36 (22%)
leucine-rich repeat 425..450 CDD:275381
leucine-rich repeat 451..475 CDD:275381
leucine-rich repeat 476..501 CDD:275381
CG5003NP_651593.1 F-box 68..114 CDD:279040 3/7 (43%)
leucine-rich repeat 610..635 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457936
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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