DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and CG12402

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001303481.1 Gene:CG12402 / 41714 FlyBaseID:FBgn0038202 Length:671 Species:Drosophila melanogaster


Alignment Length:349 Identity:86/349 - (24%)
Similarity:153/349 - (43%) Gaps:48/349 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 WKGVEAKLHLKRSSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG 253
            |......:|..|:.....||         .::.|...|:.:....| :..|:|:|..::.:..|.
  Fly   294 WCRAFENMHNLRTLKLSGNC---------HLVLLEAVLRAVPESAP-IRQLDLTGMLSLTNELLL 348

  Fly   254 HAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLK----- 313
            :........||.|||..|.|:....:..:.|....||.|.:..|..:|.||||   .||.     
  Fly   349 YVAGKWQSTLKVLDLMFCVQLNANCIDALRQLSGRLEALTMAYCRELTGTGLL---QGLAGDINY 410

  Fly   314 KLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDC-QRLSDEALGHIAQGLTSLKSI 377
            .|:.|:|.....:.:..:..|       .|....|..|.|.:| |.::|..:..|.|..|.|:::
  Fly   411 SLQELHLEETIFLDESSMCQL-------LERLPNLRRLSLDNCRQAVTDRTMATICQYQTRLRNL 468

  Fly   378 NLSFCVSVTDSGLK-------HLARMPKLEQLNLRSCDNISD----IGMAYLTEGGSGINSLDVS 431
            |:.:|:.:||.||.       .::|:..|::||||.|.|::|    :|:. |.|    :.:|.:.
  Fly   469 NIEYCMKITDQGLMGYGDTPYPISRLRGLKELNLRGCRNVTDSSLMVGLK-LPE----LRALSLG 528

  Fly   432 FCDKISDQALTHIAQGLYRLRSLSLNQCQ-ITDHGMLKIAKALHELENLNIGQCSRITDKGLQTL 495
            :|::::.:....:.|....|.:|.::.|. :.|..:|.|...|..|..||:..|:::|.:.:..:
  Fly   529 YCNRLTSEGFEALTQNCPSLEALCVSSCMAVDDETVLNIVSNLKRLRVLNLSNCTKLTLQSIHHI 593

  Fly   496 AEDLTNLKTIDLYGCTQLSSKGID 519
            .....||  :.|..|   |..|:|
  Fly   594 LAHGHNL--VQLIAC---SIDGMD 612

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity