DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and fbxl15

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_998107.1 Gene:fbxl15 / 405878 ZFINID:ZDB-GENE-040426-2440 Length:296 Species:Danio rerio


Alignment Length:308 Identity:72/308 - (23%)
Similarity:137/308 - (44%) Gaps:80/308 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 DMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGC---------------- 297
            |:.:.|.| ..|| |:.|          .||.|:::..|:|..:.|..|                
Zfish    23 DVLVSHVF-CHLP-LRLL----------VSLQRVSKSFRSLIQVYLDNCRTFDPAQTGPHIPREA 75

  Fly   298 -CNITNTGLLLIAWGLKKLKHLNLRSC--WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRL 359
             |:|....        :.|:||::.:|  | |:|..:..:.|       .|.||:::.|:.|.:|
Zfish    76 FCSILRHN--------QVLQHLSVTNCSDW-ITDTDLLPVIG-------QNQQLQHVDLRGCAQL 124

  Fly   360 SDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSG 424
            |..|          |.:::|| |              |:|:.|:|..|:.:..:.:..|.:....
Zfish   125 SRRA----------LVAVSLS-C--------------PRLQHLSLAHCEWVDSLALRSLADHCPM 164

  Fly   425 INSLDVSFCDKISDQALTHIAQGLYRLRSLSLN-QCQITDHGMLKIAKALHELENLNIGQCSRIT 488
            :.|||::.|.::.|.|:.::|.....||:||:. ...|||..:.::||...|:|.|::..|.|:.
Zfish   165 LRSLDLTACRQLKDPAVCYLAGKCPELRALSVAVNANITDTAVEEVAKKCREMERLDLTGCLRVR 229

  Fly   489 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKL-------PKLQK 529
            ::.::||||....|:::.:..|..::...:.::.:.       |.||:
Zfish   230 NEAIRTLAEYCPKLQSLKVNHCHNVTESSLGVLRRRNVEIDVEPPLQR 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689
AMN1 <226..>334 CDD:187754 23/103 (22%)
leucine-rich repeat 236..256 CDD:275381 2/6 (33%)
leucine-rich repeat 263..288 CDD:275381 5/24 (21%)
leucine-rich repeat 289..314 CDD:275381 5/41 (12%)
leucine-rich repeat 315..347 CDD:275381 9/33 (27%)
AMN1 347..524 CDD:187754 44/177 (25%)
leucine-rich repeat 348..373 CDD:275381 6/24 (25%)
leucine-rich repeat 374..398 CDD:275381 4/23 (17%)
leucine-rich repeat 399..424 CDD:275381 5/24 (21%)
leucine-rich repeat 425..450 CDD:275381 7/24 (29%)
leucine-rich repeat 451..475 CDD:275381 9/24 (38%)
leucine-rich repeat 476..501 CDD:275381 8/24 (33%)
fbxl15NP_998107.1 F-box 16..>52 CDD:279040 11/40 (28%)
leucine-rich repeat 51..85 CDD:275381 5/41 (12%)
leucine-rich repeat 86..112 CDD:275381 9/33 (27%)
AMN1 <111..272 CDD:187754 44/185 (24%)
leucine-rich repeat 113..138 CDD:275381 10/49 (20%)
LRR 1 138..159 4/20 (20%)
leucine-rich repeat 139..164 CDD:275381 5/24 (21%)
LRR 2 164..185 6/20 (30%)
leucine-rich repeat 165..190 CDD:275381 7/24 (29%)
LRR 3 190..211 7/20 (35%)
leucine-rich repeat 191..216 CDD:275381 9/24 (38%)
LRR 4 216..237 6/20 (30%)
leucine-rich repeat 217..242 CDD:275381 8/24 (33%)
LRR 5 242..263 2/20 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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