DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and Amn1

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001008334.2 Gene:Amn1 / 302032 RGDID:1308119 Length:258 Species:Rattus norvegicus


Alignment Length:287 Identity:61/287 - (21%)
Similarity:132/287 - (45%) Gaps:39/287 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 LPNLKTLD--LSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRS 322
            :|:.:.:.  |.||.:....::.|....::.|..       ||.:          :.:|.:::|.
  Rat     1 MPSSRVVSQLLELCLRCLIINISRYISDIKYLPP-------NIKD----------RLIKIMSMRG 48

  Fly   323 CWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFC----V 383
              .|:|..|..:.         :.:::.|.|:.| .:||.||.|:.: ...||::||..|    .
  Rat    49 --RITDSNINEVL---------HPEVQRLDLRSC-NISDVALQHLCK-CRKLKALNLKSCREHRN 100

  Fly   384 SVTDSGLKHLA-RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQG 447
            |:|..|:|.:| ....|.:::|:.|.:::|.|:..|......:..:|:..|..|:|::|..:.:.
  Rat   101 SITSEGIKAVASSCSDLHEISLKGCCSVTDEGVLALALNCQLLKIIDLGGCLSITDESLHALGKN 165

  Fly   448 LYRLRSLSLNQCQITDHGMLKIAK--ALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGC 510
            ...|:.:..:..|::|:|::.:..  ...:||.:|:|.|..:|||.::........:..:..:||
  Rat   166 CPFLQCVDFSTTQVSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEAALTACPQICILLFHGC 230

  Fly   511 TQLSSKGIDIIMKLPKLQKLNLGLWLV 537
            ..::....:::.:|...:||....|.|
  Rat   231 PLITDHSREVLEQLIGSRKLKQVTWSV 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689
AMN1 <226..>334 CDD:187754 13/75 (17%)
leucine-rich repeat 236..256 CDD:275381
leucine-rich repeat 263..288 CDD:275381 4/26 (15%)
leucine-rich repeat 289..314 CDD:275381 3/24 (13%)
leucine-rich repeat 315..347 CDD:275381 5/31 (16%)
AMN1 347..524 CDD:187754 43/183 (23%)
leucine-rich repeat 348..373 CDD:275381 8/24 (33%)
leucine-rich repeat 374..398 CDD:275381 10/28 (36%)
leucine-rich repeat 399..424 CDD:275381 6/24 (25%)
leucine-rich repeat 425..450 CDD:275381 5/24 (21%)
leucine-rich repeat 451..475 CDD:275381 4/25 (16%)
leucine-rich repeat 476..501 CDD:275381 8/24 (33%)
Amn1NP_001008334.2 leucine-rich repeat 10..35 CDD:275381 5/31 (16%)
leucine-rich repeat 36..58 CDD:275381 6/33 (18%)
AMN1 37..257 CDD:187754 52/242 (21%)
leucine-rich repeat 63..86 CDD:275381 8/24 (33%)
leucine-rich repeat 87..116 CDD:275381 10/28 (36%)
leucine-rich repeat 117..142 CDD:275381 6/24 (25%)
leucine-rich repeat 143..168 CDD:275381 5/24 (21%)
leucine-rich repeat 169..195 CDD:275381 4/25 (16%)
leucine-rich repeat 196..221 CDD:275381 8/24 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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