DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and AT1G47695

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001323145.1 Gene:AT1G47695 / 28717335 AraportID:AT1G47695 Length:63 Species:Arabidopsis thaliana


Alignment Length:62 Identity:16/62 - (25%)
Similarity:24/62 - (38%) Gaps:17/62 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 ESPPPVEG-----------THISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVW 189
            :||....|           ..||:|..|:|.:|...||:.:..|...:...|      ||:|
plant     5 QSPSDTRGRSVVVDVDNTKDRISDLPNEILGKIILKLPLDETVRTMALSKRW------KSIW 60

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 13/41 (32%)
AMN1 <226..>334 CDD:187754
leucine-rich repeat 236..256 CDD:275381
leucine-rich repeat 263..288 CDD:275381
leucine-rich repeat 289..314 CDD:275381
leucine-rich repeat 315..347 CDD:275381
AMN1 347..524 CDD:187754
leucine-rich repeat 348..373 CDD:275381
leucine-rich repeat 374..398 CDD:275381
leucine-rich repeat 399..424 CDD:275381
leucine-rich repeat 425..450 CDD:275381
leucine-rich repeat 451..475 CDD:275381
leucine-rich repeat 476..501 CDD:275381
AT1G47695NP_001323145.1 F-box 24..62 CDD:395521 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1282076at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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