DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and gadr-3

DIOPT Version :10

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_498378.2 Gene:gadr-3 / 185933 WormBaseID:WBGene00018561 Length:710 Species:Caenorhabditis elegans


Alignment Length:282 Identity:57/282 - (20%)
Similarity:96/282 - (34%) Gaps:84/282 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 ECPVVE-VYYGRLREYNRTVHGELLYTIVDGHVYRYDLSIETETSE-------------LHVKFI 129
            ||..:. .|.|    |:..:||..:..:...|        |.|.::             :|..|:
 Worm   270 ECSAMSAAYLG----YSFDIHGGGMDLVFPHH--------ENEIAQSCAACDSSNISYWIHNGFV 322

  Fly   130 MDDPSEPVSLYTTHLYLMRNT----DPLRAMRMLMAESKLINPDAVQQRLQGATLSERAERCKHL 190
            ..| ||.:|....:.:.:|..    .|| |:|:.:..:...:|......|    |...:||..::
 Worm   323 TVD-SEKMSKSLGNFFTIRQVIDLYHPL-ALRLFLMGTHYRSPINYSDFL----LESASERIFYI 381

  Fly   191 ---------ILGSMLSAQQNFENNNARLSSIAAAAAGSMPLDNIDVAHS-----NAQSSVEASTP 241
                     .||   .....|||             ||:|.|.:...::     .|..|.:..||
 Worm   382 YQTLHDCESALG---EKDSTFEN-------------GSVPSDTLTSINTFRTEFVASMSDDLLTP 430

  Fly   242 SNHAPAAN-----ND------GQSAAAATSMLDNIHAVNNNVQSSAGSGVPGS---VLPDMANLA 292
            ...|..:.     ||      |:..|.....|..:.....:|.:..|. :|.|   ||..:...|
 Worm   431 VTLAAMSEPLKTINDLIHTRKGKKQARREESLKALETTIRDVLTILGL-MPTSYSEVLEQLKEKA 494

  Fly   293 LSVA---NGNIETRIKQYIDAK 311
            |..|   ..::..|:::..||:
 Worm   495 LKRAGLKEEDVLQRVQERTDAR 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box_FBXL14 150..190 CDD:438897 9/43 (21%)
AMN1 <226..>334 CDD:187754 22/108 (20%)
leucine-rich repeat 236..256 CDD:275381 6/30 (20%)
leucine-rich repeat 263..288 CDD:275381 6/27 (22%)
leucine-rich repeat 289..314 CDD:275381 6/26 (23%)
leucine-rich repeat 315..347 CDD:275381
AMN1 347..524 CDD:187754
leucine-rich repeat 348..373 CDD:275381
leucine-rich repeat 374..398 CDD:275381
leucine-rich repeat 399..424 CDD:275381
leucine-rich repeat 425..450 CDD:275381
leucine-rich repeat 451..475 CDD:275381
leucine-rich repeat 476..501 CDD:275381
gadr-3NP_498378.2 PPP1R42 <176..>231 CDD:455733
Blue background indicates that the domain is not in the aligned region.

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