Protein Alignment Ppa and skpt-1

DIOPT Version :10

• Sequence 1: NP_001261138.1
• Gene: Ppa / 37602
• FlyBaseID: FBgn0020257
• Length: 562
• Species: Drosophila melanogaster
• Sequence 2: NP_741137.1
• Gene: skpt-1 / 175749
• WormBaseID: WBGene00018613
• Length: 421
• Species: Caenorhabditis elegans
• Alignment Length: 71
• Identity: 17/71 - (23%)
• Similarity: 24/71 - (33%)
• Gaps: 37/71 - (52%)

  Fly    25 AGTITSSEPEFCTLDDLLRYDQCLVLSGSEDQEPCEMHLAITPLYLVRGVSI----------IAE 79
            ||||:.||..:                ||           :|.:|:|.|..:          |.:
 Worm   187 AGTISFSEDRY----------------GS-----------VTRIYIVCGEDVAVPVDYQRGMIND 224

  Fly    80 CPVVEV 85
            .||.||
 Worm   225 FPVKEV 230

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ppa	NP_001261138.1	F-box_FBXL14	150..190	CDD:438897
		AMN1	<226..>334	CDD:187754
		leucine-rich repeat	236..256	CDD:275381
		leucine-rich repeat	263..288	CDD:275381
		leucine-rich repeat	289..314	CDD:275381
		leucine-rich repeat	315..347	CDD:275381
		AMN1	347..524	CDD:187754
		leucine-rich repeat	348..373	CDD:275381
		leucine-rich repeat	374..398	CDD:275381
		leucine-rich repeat	399..424	CDD:275381
		leucine-rich repeat	425..450	CDD:275381
		leucine-rich repeat	451..475	CDD:275381
		leucine-rich repeat	476..501	CDD:275381
skpt-1	NP_741137.1	F-box-like	92..130	CDD:463757
		leucine-rich repeat	153..183	CDD:275381
		RNA1	<171..347	CDD:444072	17/71 (24%)
		leucine-rich repeat	184..208	CDD:275381	11/47 (23%)
		leucine-rich repeat	209..232	CDD:275381	5/22 (23%)
		leucine-rich repeat	233..258	CDD:275381
		leucine-rich repeat	259..284	CDD:275381
		leucine-rich repeat	285..313	CDD:275381
		leucine-rich repeat	314..339	CDD:275381
		leucine-rich repeat	340..362	CDD:275381
		leucine-rich repeat	365..388	CDD:275381