DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppa and EEED8.10

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001040757.1 Gene:EEED8.10 / 173919 WormBaseID:WBGene00017138 Length:738 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689
AMN1 <226..>334 CDD:187754
leucine-rich repeat 236..256 CDD:275381
leucine-rich repeat 263..288 CDD:275381
leucine-rich repeat 289..314 CDD:275381
leucine-rich repeat 315..347 CDD:275381
AMN1 347..524 CDD:187754
leucine-rich repeat 348..373 CDD:275381
leucine-rich repeat 374..398 CDD:275381
leucine-rich repeat 399..424 CDD:275381
leucine-rich repeat 425..450 CDD:275381
leucine-rich repeat 451..475 CDD:275381
leucine-rich repeat 476..501 CDD:275381
EEED8.10NP_001040757.1 RRM <101..273 CDD:223796
RRM_SF 114..197 CDD:240668
AMN1 <313..>464 CDD:187754
leucine-rich repeat 316..337 CDD:275381
leucine-rich repeat 344..368 CDD:275381
leucine-rich repeat 369..395 CDD:275381
AMN1 394..615 CDD:187754
leucine-rich repeat 396..418 CDD:275381
leucine-rich repeat 419..444 CDD:275381
leucine-rich repeat 445..470 CDD:275381
leucine-rich repeat 471..497 CDD:275381
leucine-rich repeat 498..520 CDD:275381
leucine-rich repeat 524..551 CDD:275381
leucine-rich repeat 552..576 CDD:275381
leucine-rich repeat 577..601 CDD:275381
leucine-rich repeat 602..627 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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